Pseudomonas sp. RIT288, BW33_RS13245
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCCGCTGCTGACCTGCGACGTCTGGGAACACGCTTACTACATCGACTACCGCAACCTGCGTCCGAAGTACGTTGAGGCGTTCTGGAACCTGGTCAACTG GAAGTTCGTCGCTGAGCAGTTCGAAGGCAAAACCTTCACCGCTTAAGCTGCGCGCCAGATAAGAAACCCGGCTACGGCCGGGTTTTTTTATGCCTGCTAT TCCCCTGTAGGAGCTGCCGCAGGGAATAGCGTTTTTCTCACAATGAACGCTGGCTCCGGCCACTTGCTGGTGCGGCCCAGCGGACTAACATCAAACCGAG GAAAATTTGTTCCAGACTGCTCAAGTTGAGGGCCGACACTACCGACACAGTACAAATAGAGCTGATACTCCAGACAGCAGCATTTCGGCCAAGGCCACGG GCAAATGTTCCGAGGCTCGATTGTCCCTTTGACTGGCAACACGGGATTGCCAATACTCATGGCAACTTGACGCTACCCGCACGGAACAAGGAATTACCCT
|
|
| DNA Sequence for Gene |
>BW33_RS13245
TTGAAGCTGGAACTCAAGAACAGCTTGTCGGTGAAGTTGCTCCGGGTCGTGCTCCTTTCGGCATTGATCGTCGGTGTAGTCTTGAGCTGCGCCCAGATTG TTTTCGATGCTTATAAAACCCGCCAGGCGGTGGCCGGCGATGCGCAGCGCATCCTCGACATGTTCCGCGATCCCTCGACTCAGGCGGTCTACAGCCTGGA CCGGGAAATGGGCATGCAGGTGATCGAAGGCCTGTTTCAGGACGACGCCGTGCGCCAGGCCTCCATCGGCCATCCCAACGAAGCGATGCTCGCGCAAAAA TCCCGTGAGTTGCAGCACTCCAACAGCCGCTGGCTGACTGATCTGATTCTCGGTCAGGAACGCACCTTCACCACCCAATTGGTCGGTCGCGGCCCGTACA GCGAGTATTACGGCGACCTGAGCATCACCCTCGACACCGCCACCTATGGCGAGAGTTTCATTGTCAGTTCGGTGATCATTTTCATTTCCGGCGTCTTGCG CGCCCTGGCCATGGGCCTGGTGCTGTATCTGGTCTATCACTGGCTGCTGACCAAGCCACTGTCGCGGATCATCGAGCACCTGACCGAAATCAATCCCGAT CGTCCCAGCGAGCACAAGATTCCGCAGCTCAAGGGTCACGAAAAGAATGAACTCGGTATCTGGATCAACACCGCCAACCAGTTGCTCGAATCGATAGAAC GCAACACGCACCTGCGCCACGAAGCGGAAAACAGCCTGCTGCGCATGGCCCAGTACGACTTCCTCACCGGCCTGCCGAACCGCCAGCAATTGCAGCAGCA ACTGGACAAGATTCTGGTCGACGCCGGCAAGCTGCAACGCCGGGTCGCGGTGTTGTGCGTGGGACTGGATGATTTCAAAGGCATCAACGAGCAGTTCAGC TACCAGACCGGCGACCAATTGCTGCTGGCGCTGGCCGACCGGCTGCGCGCCCACAGCGGTCGCCTCGGCGCCCTCGCCCGGCTTGGCGGCGACCAGTTCG CGCTGGTGCAGGCCGATATCGAACAACCTTACGAAGCGGCAGAGCTGGCGCAAAGCATCCTCGATGATCTGGAAGCGGCGTTTGCCCTCGACCATCAGGA AATCCGCCTGCGCGCGACCATCGGCATCACCCTGTTCCCCGAGGACGGCGACAGCACCGAGAAGCTGTTGCAGAAGGCCGAGCAGACCATGACGTTGGCC AAGACTCGTTCGCGCAATCGCTATCAGTTCTACATCGCCAGCGTCGACAGCGAGATGCGTCGCCGTCGCGAACTGGAAAAAGACCTGCGCGATGCGCTGA TTCGCGACCAGTTCTACCTCGTCTATCAGCCGCAGATCAGCTACCGCGATCACCGCGTGGTCGGGGTCGAAGCGCTGATTCGCTGGCAGCATCCGGAACA CGGCCTGGTGCCGCCGGACCTGTTCATTCCGCTGGCCGAACAGAACGGCACGATCATCGCCATCGGCGAGTGGGTGCTGGATCAGGCCTGCAAGCAATTA CGCGAATGGCACGATCAGGGCTTCGTCGATCTGCGCATGGCGGTCAACCTGTCCACCGTGCAACTGCACCACGCCGAGCTGCCGCGGGTGGTCAATAACC TGCTGCAGATCTATCGCCTGCCGCCGCGCAGCCTGGAACTGGAAGTCACCGAGACCGGCCTGATGGAAGACATCAGCACCGCCGCCCAGCATCTGCTGAG CCTGCGCCGTTCCGGGGCGTTGATCGCCATTGACGACTTCGGCACTGGCTACTCATCGCTGAGTTATCTGAAGAGCCTGCCGCTGGACAAGATCAAGATC GACAAGAGCTTCGTCCAGGATCTGCTGGATGACGACGACGATGCAACCATCGTTCGCGCGATCATACAACTGGGCAAAAGCCTGGGCATGCAGGTGATTG CCGAAGGCGTGGAAACCGCCGAGCAGGAGTCCTACATCATCTCCGAAGGCTGCCACGAAGGTCAGGGCTACCACTACAGCAAGCCGCTGCCTGCCCGGGA GCTGACCGCGTACCTCAAGCAAGCCCAACGCACCAATGCTGCCATTCTCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAGATCAAAAGATCGTCCGATCGCGGCCCGAGCCTGCGGCAGCTCCTACAGGATCCGCATTCCCCTGTAGGAGCTGTCGAGCGAAACGAGGCTGCGATCT TTTGATCAGCGCCAACACACTGGCGTAAACAAGAAATATTTCCAGTCACAGCCCTTTACACATAATGCGAAAGATTTGCATTATGTCGCAGCTTTGCGCG CCCCCGCGCCCTGTCCATTCATTTACCGAAGCAGGATGTTCGCCATGATTCGTATGCCTCTGGCTACCGCCAGTCTGCTGGCCATCGCTATTTCCCTCGC CGGTTGCGGCGAAGGCAAAGACAAGGCTGCCGCCCCGGCCACGCCGACGCCGGCCGCCAGCACCGCTGCCGCTGCTCCTGCCGCAGCCGGTAAAGTCGAC GAAGCCGCCGCCAAGGCTGTGGTCGCGCACTATGCCGACATGGTCTTCGCCGTCTACAGCGATGCCGAATCCACTGCGAAAACCCTGCAAACCGCGGTCG
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVAGDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDDAVRQASIGHPNEAMLAQK SRELQHSNSRWLTDLILGQERTFTTQLVGRGPYSEYYGDLSITLDTATYGESFIVSSVIIFISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTEINPD RPSEHKIPQLKGHEKNELGIWINTANQLLESIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQRRVAVLCVGLDDFKGINEQFS YQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAAFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KTRSRNRYQFYIASVDSEMRRRRELEKDLRDALIRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAEQNGTIIAIGEWVLDQACKQL REWHDQGFVDLRMAVNLSTVQLHHAELPRVVNNLLQIYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQESYIISEGCHEGQGYHYSKPLPARELTAYLKQAQRTNAAIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|