Pseudomonas sp. RIT288, BW33_RS12280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT288 contigs2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AAATCACGCTGTTTCCCAACGCCCGGCGACCTTATCTTTGCCCGCACCAAACAGCACTTGCCAAGCAAGAAGGTTTTCAAGATGTCCAACAGTATGGGTA TTGCCAGCGCTTTCGTTTTGTCCTCGTTGATCCTGTCGCCAATGGCGATGGCTGAAGAATCGCAGTCGTTCGTAGCGCAGAATGCCGCTCGCGCTCACGC CTTCGAACAGTCTCAGGCAGAAGTGATGGTCAAGTCGCAGGACGCCTCGCAAGCCCCTCAAGCCGCCACTTCCCAGGCTCAAGCATCCGAGAAAGACAGC TGAGTCGCGCACCACGAAACCTTTCCCTCGACGCGGTTGTTTGGCTCTTCCCGTTCAACCGTCGTCCTTCCAGGCCGCTGCCTTTCAGCGGCCTTTTTTC GTTGTGGTCTGAAAGCCGTCTGGTTCGTCTGTAAAAAACAAGAAACATCCCGCACCTCAAGACATTGAAGTGTCAGTTGACCCAAGGAGCTCCATCGCAA
DNA Sequence for Gene
>BW33_RS12280
GTGCGTTACCCAGTCCGCGTCACCCCGCTGTTCATTGCAATTGCCGCAACGATTGCCCCTGTCGCCCATGCCGACGAAGCCGCCAGGGAAGGTTTCGTCG AAGGCTCGAGCCTCAACCTCAACGCTCGCAACTACTACATGAATCGCAACCGTCTGCAGCAGACGGACGACAACATCGAGTGGGGCCAGGGTTTTCTCGG GATCTTCCAGTCGGGTTACACCGAAGGCACGGTCGGCTTCGGCATCGACGCCCACGCCATGCTCGGGCTGAAGCTCGACGGCGGTGGCGGCACCGATGGC TCAAGCATCCTGCCGATCAGCGATGGCAACGGCAAAGCGCCGGGCTCGTTCTCGACCGCGGGCGGCACGTTGAAAATGCGCGCGTTCGATACCGAGCTGA AGGCCGGCGACCTGTTCCTCACCAACCCGGTGATCGCCGGCGGTGAATCGCGCATGCTGCCGCAGACCTTCCGTGGCGTCAGTCTGAACAACCACAGTTT CGACGGCTGGATGATCGAAGGTGGCCAGGCCAGTTTCACCAAGCCGTACAACCAGAGCGGTCGCCAGCGCATCGGCACGTCCTACGGCAAACTCGCGGAT GGCGACGTAAGCCGTCACCTGAACTGGGCCGGCGTGTCCTGGAGCGGCGTCGAAGGCCTGACCAGCAACCTGTACGCCGCCGAGCTCAAGGACATCTGGA ACCAGTACTACTACGATCTCGACTACACTTGGCAGTTGAACGATCTGGTCAGCCTCAACCCGGGCCTGCACTTCTATCACACGCAGGACACCGGCGACGC GCTGCTGGGTAACATCGACAACAACACCTACAGCCTGCATTTCACCGTCGGCATCGGCAACCACAGCGTCACGGCTGCGTACCAGCGGGTCAACGGCAAC ACGCCGTTCGACTACATCAGCCAGGGCGACAGCGTTTACCTCGACAACTCGCAGCAGTACTCGGACTTCAACGGCCCGAACGAGCGCTCGTGGAAGCTCA AGTACGCCTACGACTTCGCCGGTCTCGGTCTGCCGGGCCTGACCCCGGCAGTTTCCTATTCGCGTGGCACCGTGGACCTGACCAAGGTCGATCCGGACAG CAAAGGCTATGCCTCGTGGTACAGCGCTGACGGTCGCAACGCCAAACACTGGGAACGCGACCTTGATCTGAAATACGTGGTGCAGAGCGGCCAGGCAAAA GACCTCGCGGTACGCCTGCAATGGGCGACCAACCGGGGTGGCAACGGTTACGGCGCGATTGATACGGATACCGATGAATACCGTGTGATTGTCGACTACC CGATCAACGTCTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GATCAATCAGTTAACACTGAACCTGTAGGAGCTGCCGGAGGCTGCGATCTTTTGATCTTGTTTTTAAAAAACCAAGATCAAAAGATCGCAGCCTCCGGCA GCTCCTACGCTTATAAGATCCCCCAACCGACAGCCCCCATCATGATCGCGAGCCGTACCCCACCTCTGGCGGGCAAGACCGGACGCCCCGAATTGCTGCT GATCTGCGGCAGTACGCTGACCGTGATCGCAATTCTGTGCATCGTCACTTTTCTGCTGATTCGTGAGCACGCCAACGCTCAGGAAGCGGCCACCCGCAGC GCCACCACCATCGCCCAGTTGATCGACGCCGACGTCCTGCGCACGGTCGAGTTGTACGACCTGACCTTGCAAGGCCTGATCGCCGCCGCCCAGCGCGGCG ACTTGCGCGATGTCACCCCGCAGATCCGCCATCTGGCACTGTTCGACCGCTCCACCACCGCACGCTTCAAGGGCGACATCCTGCTGCTCGACAAGCAGGG
Amino Acid Sequence
>porin
MRYPVRVTPLFIAIAATIAPVAHADEAAREGFVEGSSLNLNARNYYMNRNRLQQTDDNIEWGQGFLGIFQSGYTEGTVGFGIDAHAMLGLKLDGGGGTDG SSILPISDGNGKAPGSFSTAGGTLKMRAFDTELKAGDLFLTNPVIAGGESRMLPQTFRGVSLNNHSFDGWMIEGGQASFTKPYNQSGRQRIGTSYGKLAD GDVSRHLNWAGVSWSGVEGLTSNLYAAELKDIWNQYYYDLDYTWQLNDLVSLNPGLHFYHTQDTGDALLGNIDNNTYSLHFTVGIGNHSVTAAYQRVNGN TPFDYISQGDSVYLDNSQQYSDFNGPNERSWKLKYAYDFAGLGLPGLTPAVSYSRGTVDLTKVDPDSKGYASWYSADGRNAKHWERDLDLKYVVQSGQAK DLAVRLQWATNRGGNGYGAIDTDTDEYRVIVDYPINVF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site