Pseudomonas sp. RIT288, BW33_RS11375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs19, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCTGCGGACGCGGGGTCACGGTGCCGATTTCGACAAAACCGAAACCCAGTTGCGAGAAACCGTCGATGGCCGCGCCGTTCTTGTCCAGACCGGCCGC CAGACCCACCGGGTTCGGGAAGTCCAGGCCCATGACCGTCACCGGCACATTCGCCGGCTTCTTGCACAACATGCCGTTGAGGCCCAAACGTCCACCCGCG CCGATCAGATCCAGCGACAGGTCGTGGGAGGTTTCCGGGGAAAGTTTGAACAACAGCTGACGGGCCAGGGTGTACATGGGCGGCGATGACTCGGGCGGCG AAAAGAGGCGGCGATTATAGCCGGGCATCGCCCCCCGGCGCGAGGCGCACAGGCAAATCAGACTGACTGGCATATGCCTTGCACTTTCAGGGTTATCAGC CCACCGGCCAATGACGGCGTGAGGGCACGGACAATGGCGTCGTTCGCAGGTTTTGCCTGAGCAAAGCCTGGGACGGCGTTTTTTTTGAAGGTGGCTTTAT
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| DNA Sequence for Gene |
>BW33_RS11375
ATGAGTGATTCGTCCGTCGGGCCGCTGGCCTGGGTCCATGGCAGTGATGCCCCGGAAAAGAGTGTGATCAACCTTGGTTTCATGGCCCTGAGCGATTGCG CATCGGTGGTCGTGGCCGCCACGCAAGACTTTACCCAGCCCTACGGCCTGACGATCAACCTCAAGCGGCAGGCGTCCTGGGCGACGTTGCGCGACAAACT GGTCAGCGGTGAACTGGATGTCGCCCATAGCCTGTACGGGCTGATTTACGCGGTGCATCTGGGCATCGGCGGCGTAGCGCCGAGCGACATGGCGGTGCTG ATGGGGCTGAACCAGAACGGCCAGAGCCTCAACCTCTCCCACGGTTTGCAGCAACTGGGCATGACCAGTCCTGAGGCGCTGGATCGGCACGCGCACCAAA CCCGCGCAAAACTGACCTTCGCCCAGACCTTCCCCACCGGCACCCATGCGATGTGGCTTTATTATTGGCTGGCAAGTCAGGGCATTCATCCGTTGCAGGA CGTCGACAGCGTGGTGGTACCGCCGCCGCAAATGGTTGCGCACCTGCAAGCCGGGCGTATCGATGGCTTCTGCGTCGGTGAGCCGTGGGCGGCCAGCGCC GTGCAACAGGATCTGGGATTCACCCTCGCCACCAGCCAGAGCATCTGGCCCGACCACCCGGAAAAGGTCCTCGGCTGCACCCGCGCGTTCGTCGAGCAAT ACCCCAACACCGCACGGGCGCTGGTGATGGCGATCCTCGAGGCCAGCCGTTTCATCGAGCAAAACCCGGAAAACCGCCGCAGCACCGCGCAGTTGCTGAG CGCCCCGGAATACCTCGATGCCCCGCTGTCCTGCATCGAGCCGCGTTTTCTCGGTGATTACGCCGATGGCCTCGGCAATCGCTGGCAGGATCCGCACGCC CTGCGCTTCCACGGCAACGGCGAGGTAAATCTGCCGTACCTGTCCGACGGCATGTGGTTCATGACCCAATTCCGCCGCTGGGGCCTGTTGCGCGAGGATC CCGACTACCTCGCCGTTGCGCGTCAGGTTCAGCAACTGGACATCTACCGCGAAGCGGCCACCGCCGTCGGTGTCGCGGCCTGGGGCAAGGAAATGCGCAG CAGCCAGTTGCTCGATGGCAAAGTCTGGGACGGCAGCGATCCCGCCGCTTACGCTCGCAGTTTCAAGCTGCACGCCATGAGCGACAGCGCTGCCCTTCTC GCCCGCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGAGACCGCCAATATGCTGCGCATTCTGCTGATCAACGACACCGCGAAAAAAGTCGGCCGCTTGAAGGCCGCGCTGACCGAGGCCGGTTTCGAGGTCA TCGATGAGTCCGGCCTGACCATCGACCTGCCGGCGCGCGTCGAAACGGTGCGCCCGGACGTGATTCTGATCGATACCGAGTCACCGAGCCGCGATGTCAT GGAGCAAGTGGTGCTGGTCAGCCGCGACCAGCCCCGGCCGATCGTGATGTTCACCGACGAACATGACCCGGGGGTGATGCGTCAGGCGATCAAGTCCGGA GTCAGTGCCTACATCGTCGAAGGCATCCACGCTCAGCGCTTGCAGCCGATTCTCGATGTGGCGATGGCGCGCTTCGAAAGCGATCAGGCGTTGCGCGCGC AACTAGTGGCCCGCGACCAGCAACTGGCCGAGCGCAAACGCATCGAACTGGCCAAAGGGCTGCTGATGAAGATGAAGGACTGCAACGAAGAAGAGGCCTA
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| Amino Acid Sequence |
>nitrate transporter
MSDSSVGPLAWVHGSDAPEKSVINLGFMALSDCASVVVAATQDFTQPYGLTINLKRQASWATLRDKLVSGELDVAHSLYGLIYAVHLGIGGVAPSDMAVL MGLNQNGQSLNLSHGLQQLGMTSPEALDRHAHQTRAKLTFAQTFPTGTHAMWLYYWLASQGIHPLQDVDSVVVPPPQMVAHLQAGRIDGFCVGEPWAASA VQQDLGFTLATSQSIWPDHPEKVLGCTRAFVEQYPNTARALVMAILEASRFIEQNPENRRSTAQLLSAPEYLDAPLSCIEPRFLGDYADGLGNRWQDPHA LRFHGNGEVNLPYLSDGMWFMTQFRRWGLLREDPDYLAVARQVQQLDIYREAATAVGVAAWGKEMRSSQLLDGKVWDGSDPAAYARSFKLHAMSDSAALL ARR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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