Pseudomonas sp. RIT288, BW33_RS08645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCCGCCGCTTCAGTGATTTTCAGAAGAATCTGGACATCGCCAAGAACATGCTCAGCGCCAGGCTCAAGGCTCTGGTCGAGCAGGGGATCCTGCAAACCG TGCCGGCCGCCGATGGCGGTGCCTATAAGGAATACGTGCTGACCGAACGCGGCAAGGCCTTGCAGACGGTGATCGTCGCGCTGTCGCAGTGGGGCGGCGA GCACCTGTATGCGCCGGGTGAGCAGGGTTCGGTGATGGTTGATGCGCAGCAGCGTCAGCCGATCAGGAAGCTGGAGTTGCGTTCAGCGGATGGTCGCTTA TTGGCGCCGCAGGACGTGGCGACGAAGTTGGGCGTTGCGCACTGAACCAAGGATTCCCCCCCGGAAAACCGCAGCCGCGTCGATTGTTCAATCCCTGTTA CAAACCCGACAAACGGTCGAAATGTTTGTTTGACGTCAAAATGATGGCCATCTAATATCGCGCCACTATTTTGATGTCATTCCGTCTCGAGGGATCGAAC
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| DNA Sequence for Gene |
>BW33_RS08645
ATGTATCCATCCGCCCTCGTGGCGAGGTTGTGCGCAGCTTTGCTGTGCCTGTCTCCACTTCAGATTGCCTTCGCTGCACCCACTCCCGGTGAAACCGACC TGATCCGCGATCGCCAGAATCGCTTGCTCGAAGAGCAGCAGCGGCGTCTTGAAGACCTGAAAAATCTGCCCGGCAAAGAGGCAGGTCCGGCGCAACCAGC GGCGCCCACCGACACCCGCTGTTTCCCGATCAAGGACATCGAGCTCAAGGGCGCCGACAGTCTGTCCGACAGCGACAAAACCCGCTTGCTCAAGCCCTAC ATCGACCAGTGCCTCGGGGTGCCGCAACTCAACGAGTTGCTCAAGGTCATCACCGACCATTACATCGAGAAAGGCCTGGTCACCAGCCGAGCCTACCTGC CGCAGCAGGATCTGTCCGGCGGGCATCTGAAAGTGCTGGTGGTCGAGGGCAAACTCGAAGGCATGAAGGGCGCCGAGAACAGCCAGCTTTCACAGCGCGA ACTGGCCATGGCATTTCCCGGCAAGTCCGGTGAACTGGTCAACCTGCGCGAGATCGAGCAGATGGTCGATCAGCTCAATCGCCTGCCGTCCAATCAGGCA AAGATGGAGCTGGCGCCGGGCAAGAACGTCGGCGGCAGTGAAGTGCTGGTCACCAATACGCCGCAGAAGCCATGGCGTGCCGGACTGTCGCGCAGCAACG ACGGCCAGCGCAGCACCGGCGAACAGCAGTGGGGCACCAACTTTGATTGGGACAGCCCGCTGGGGCTGGCCGATCAGTTGAGCCTGCGCGGCGGTCACGA TGCGATGACCGACCACCAGCACACCTCCAGCAACGCCATGCTCAATTACAACCTGCCGTGGGGCTGGTGGAACTTCAGCTACACCTACAGCCAGAGCGAT TACCGCTCGCAGATCGCCGCCAACGGCTACAACTTCAAGCAGACCGGCGACAGCGAAAACCATCAGTTGCGTGCCGAGCGGGTGATCCATCGCGATTCGG TGAGCAAGACCTCGCTCAGCGCCGGCCTGTCCTACCTGCGCACCAACAACTTCATCGAAGACAGCAAGCTCAAGCTGAGCAGCAATCGCATCAGCGAAGC GCAGTTCGGCTTCAACCACGGTCGCCGCATCGGCAGCGCCTTCGTCAACGTCGACGCCGGCATGCAGGAAGGCATCGGCGCCTTCGACGCACAGGGCAGC CACGATCCAGGCCCCGGCGAACCGGATGCACGCTACCGCAAATACACCGCGACCCTGAGCTATCTGCAACCGTTCAAGGTGTGGGGCGAATCCTTCACCT TCAGTAGCCTGATGACTGGCCAGCGCAGCGAGGACGTGCTGTTCAGTTCACAACGCACCAGTCTCGGCGGGCTGTCGTCGATCCGTGGCTACAAGGATCA GTCGTTGTCCGGCGACAGCGGCGGCTACTGGCGCAACGACCTGCGCTGGAGCCGTCCGGTGACGGCCGAATGGCTGCGCCCGGTGTTCGCTGAATACGGC ACCAGCCTCGGTTACGACCAGGGCGTGATTCGCGGCGACCGCTACAACGGTGATCAGCACGGGCGCATGTCGAGCAACTCGCTGGAACTGTTCGCCCGTG GCGAGCACGTGGCCGCCAGTGTGACCTTTGCCCATTCCCTGGAACGCCCGGATGTACTGACCGAGCGTGAAGCGCCGATCTATTTCCGCCTCGACTTTTT CATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCAAATTCTTCGAGACCATCGACATGGATGTTCGTCAGTTCGCCTTCCTTGCAGGCCAGCCTTCTGCGGCCGTAAAAAACCGTGAGTCGTTTCTGGGCA TGCCCAAGCGCGGGCTGGCGTTCCTGCTGGCGAACGTCATGTTCTGGCAACCGATGTGGGCGCAGGCCGACGGCATTGTCGTGGCCAACCCGAACACCGC GCTGGATCGGGCCGGTAATGGCGTGCCGATCATCAACATCGCCACGCCCAACGGCAGCGGGCTGTCGCATAACCAGTTCCACGATTACAACGTCGGCGCG CAGGGCGTCATCCTCAACAACGGCTCGACGCAGACCTCGAACACCCAGTTGGCCGGGCACATCATCGGCAACCCGAACCTGAAAAACAGCGGCTCGGCGC AAGCGATTCTCAACGAAGTCATCAGCGGCAACCCGAGCCAGTTGCGCGGTTACACCGAAGTGGCGGGGCAGTCGGCGCGAGTGATCGTCGCGAACCCGTA
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| Amino Acid Sequence |
>ShlB family hemolysin secretion/activation protein
MYPSALVARLCAALLCLSPLQIAFAAPTPGETDLIRDRQNRLLEEQQRRLEDLKNLPGKEAGPAQPAAPTDTRCFPIKDIELKGADSLSDSDKTRLLKPY IDQCLGVPQLNELLKVITDHYIEKGLVTSRAYLPQQDLSGGHLKVLVVEGKLEGMKGAENSQLSQRELAMAFPGKSGELVNLREIEQMVDQLNRLPSNQA KMELAPGKNVGGSEVLVTNTPQKPWRAGLSRSNDGQRSTGEQQWGTNFDWDSPLGLADQLSLRGGHDAMTDHQHTSSNAMLNYNLPWGWWNFSYTYSQSD YRSQIAANGYNFKQTGDSENHQLRAERVIHRDSVSKTSLSAGLSYLRTNNFIEDSKLKLSSNRISEAQFGFNHGRRIGSAFVNVDAGMQEGIGAFDAQGS HDPGPGEPDARYRKYTATLSYLQPFKVWGESFTFSSLMTGQRSEDVLFSSQRTSLGGLSSIRGYKDQSLSGDSGGYWRNDLRWSRPVTAEWLRPVFAEYG TSLGYDQGVIRGDRYNGDQHGRMSSNSLELFARGEHVAASVTFAHSLERPDVLTEREAPIYFRLDFFI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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