Pseudomonas sp. RIT288, BW33_RS05990

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT288 contigs13, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGACGAAAGCCCTCTTTCATGCGTAGCCCAAGCCCCGTGCGGCGCCGGACACCGTCGCCAGAATCACGCTTGGCACCAGCAGACCGACCCACGCCGACCA CGCCGTGCGGCAAGCGAAACACCACAGCACCGCGACCAGATAGACCAGAAAGGAAATGGTCATGCCGGTCACCACCGCTTCGGCGCGGCTCAACGGCAGC CACATCGTCAAGGCGACACTGGCCAACGCCGCAACCAGATAGCCGCCGAACACCGCCGCCAGCACCCGCGAGGTGACAGCCAGACGATAGGACATGGGAA GTGAGGCGAGTTTGCCTTTCATGTTTCGACCCTGAAACGAAAAAACGTCCGGCCGACAAGCCGAACCAACAGGCGAGCAATATTAATGATAAATATTCTC ATACGCAAAAGCATCTGATTGCCGGACACCCTCGCCCACCCCTACAATGCGAACAGTTCTTGTTCTCTAACGCATCGATCATGCGCCCGGAGTAATACCC
DNA Sequence for Gene
>BW33_RS05990
TTGCCGTCCGCCCATCCCGTCGAATCGCTCTACCACGACCACCACAGCTGGCTCACCGGCTGGTTGCGGCGCAGACTCGGCTGCCCGGACAGCGCGGCGG ATCTGGCACAAGACACGTTCCTCCGCGTGCTCAGCGCCCGCGACCCCGCAGTGATCATCGAACCGCGCGCCTTTCTCACCACCCTCGCCAAACGCGTGCT GTTCAATCATTACCGCCGTCAGGACCTGGAGCGCGCCTATCTCGAAACCCTGGCGCAGATGCCGGAAGTGACCGCGCCATCGGAGGAAGACAAAGCGATC ATCCTGCAAACCCTGATCGAACTGGATCAGTTGCTCGATGGCTTGCCACGACCGGTCAAACGCGCCTTTTTGCTGGCGCAGGTCGATGGCCTGACTTATC CGCAAATCGCCGCCGAGCTGGGCATCTCCGTAGCCACGGTCAAGCGTCACCTGCAAAAAGCCGCCCTGCGCTGCTACTTCGCCCGATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATCGCGTTCCGGATTTCTCTGCGCAAGTGGCCGAACAGGCCGTGCACTGGCTGATGGAAATGCAGCAAGGGTCGCTCTCCCCGCGCCAGCAACAAGCCTG GCAGCAATGGCTGGACGCCCACAGCGAACATCGTCGGGCGTGGGAGCACATGCAGCGGGTCAACCAGCGCTTGCGCGGCGTGGCGTCACCATTGGCCCAC GCCGCGTTGAACGGGCAGAAGTCTTCCAGCCGCCGTCAGGCGCTCAAATTGCTGCTGCTTCTCGGTGCCGGTTCTGCCGTCACCTGGGGCATGCGCGAGC ACAATCCACTGCCGACGCTGCTCGCCGATTACCGCAGTCCGCTGGGTGAGCGACGCAAAGTTACGCTGGGTGCGGGCAGTCAGTTGCAGCTCAACACCGC GAGCGCGGCAGACGTGGACAGCACGCAACGGCTGATTCGTCTGCTGGAAGGCGAGATCCTCCTGAGTACCGCACAGGCGTTCGAAGTGCGCACGGCACAA
Amino Acid Sequence
>RNA polymerase sigma factor
MPSAHPVESLYHDHHSWLTGWLRRRLGCPDSAADLAQDTFLRVLSARDPAVIIEPRAFLTTLAKRVLFNHYRRQDLERAYLETLAQMPEVTAPSEEDKAI ILQTLIELDQLLDGLPRPVKRAFLLAQVDGLTYPQIAAELGISVATVKRHLQKAALRCYFAR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site