Pseudomonas sp. RIT288, BW33_RS03265

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF16767 Sensor domain of alginate biosynthesis sensor protein KinB IPR031909 Alginate biosynthesis sensor protein KinB, sensor domain 39 158 2.1E-30
CDD cd19409 KinB_sensor IPR031909 Alginate biosynthesis sensor protein KinB, sensor domain 45 158 2.18678E-38
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 490 596 7.6E-31
SUPERFAMILY SSF158472 HAMP domain-like - - 196 245 1.96E-6
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 527 541 2.4E-17
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 361 444 3.92E-16
SMART SM00304 HAMP_11 IPR003660 HAMP domain 196 248 1.8E-9
Pfam PF08448 PAS fold IPR013656 PAS fold-4 265 371 4.1E-12
Gene3D G3DSA:1.20.120.880 Histidine kinase (KinB), sensor domain IPR038320 KinB, N-terminal domain superfamily 38 169 7.5E-46
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 374 440 6.24283E-12
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 545 555 2.4E-17
Coils Coil Coil - - 485 505 -
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 558 576 2.4E-17
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 377 444 9.8E-12
Gene3D G3DSA:1.10.8.500 HAMP domain in histidine kinase - - 195 246 1.1E-5
SMART SM00091 pas_2 IPR000014 PAS domain 259 324 1.2E-4
Gene3D G3DSA:1.10.287.130 - - - 369 443 1.6E-15
Pfam PF00672 HAMP domain IPR003660 HAMP domain 194 245 1.1E-8
CDD cd00130 PAS IPR000014 PAS domain 268 367 2.69989E-5
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 376 444 5.2E-17
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 252 368 3.14E-14
Gene3D G3DSA:3.30.450.20 PAS domain - - 247 368 7.1E-20
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 449 596 9.6E-46
CDD cd00075 HATPase - - 495 594 1.46799E-35
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 433 594 2.23E-45
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 258 374 2.0E-10
FunFam G3DSA:3.30.565.10:FF:000006 Sensor histidine kinase WalK - - 449 596 5.8E-38
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 582 595 2.4E-17
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 491 593 4.5E-25
CDD cd06225 HAMP - - 201 243 2.51433E-7
PANTHER PTHR44936 SENSOR PROTEIN CREC - - 4 594 1.6E-86

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.