Pseudomonas sp. RIT288, BW33_RS02685

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 306 402 5.6E-7
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 706 954 1.09E-90
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 380 955 0.0
SMART SM00267 duf1_3 IPR000160 GGDEF domain 518 691 3.3E-49
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 702 957 2.3E-93
SMART SM00052 duf2_2 IPR001633 EAL domain 701 947 6.1E-122
Coils Coil Coil - - 214 255 -
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 409 516 2.97E-23
SMART SM00086 pac_2 IPR001610 PAC motif 476 518 0.002
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 401 524 2.3E-16
SMART SM00086 pac_2 IPR001610 PAC motif 353 396 7.5E-8
SMART SM00091 pas_2 IPR000014 PAS domain 279 346 53.0
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 536 701 7.9E-47
Coils Coil Coil - - 695 715 -
CDD cd01948 EAL IPR001633 EAL domain 707 947 1.34343E-112
Pfam PF08447 PAS fold IPR013655 PAS fold-3 306 389 3.0E-19
CDD cd00130 PAS IPR000014 PAS domain 291 393 1.20924E-7
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 529 686 2.4E-40
CDD cd01949 GGDEF IPR000160 GGDEF domain 530 689 7.31901E-49
SMART SM00091 pas_2 IPR000014 PAS domain 404 470 5.5E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 395 535 3.4E-30
Gene3D G3DSA:3.30.450.20 PAS domain - - 271 392 4.1E-33
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 288 395 5.41E-15
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 534 693 8.63E-41
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 528 688 1.4E-29
CDD cd00130 PAS IPR000014 PAS domain 413 515 1.56581E-8
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 702 957 7.0E-103
Pfam PF00563 EAL domain IPR001633 EAL domain 707 942 4.1E-74
Pfam PF13426 PAS domain IPR000014 PAS domain 415 516 7.8E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.