Pseudomonas sp. RIT288, BW33_RS02610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTTCATGGCGGTCGGTCAGCGTGCTGACGATGTCGAGCAGGCGCCCGCCGTCGCTGAAGGTTTCGGCGTGGCCGTAGGCGTGCACGGCGACGTAGTTC CAGGTCGGCACGACTTTGCCGTGCTCGGCCTTGTCTGGGTAAAACCCCGGGCTGACGTAGGCGTCGGGACCGGCAAAAATCAGCATCGCTTCGGCGCCGT CACGCAGGTCTTTCCATTGCGGATTGGCTTTGGCCAGGTGCCCGTAGAGCGTGCCGTTCGGGCCCTGTTCGCGGTGCAGCAGCACCGGCACATGACTGGC TTGCAGACCGTTTTCACCGTGACTCACAAGAATCGCGAGACGGGTGGCGAGGATCAGTTCGTGCAGTTGCGACAGTTCGTCGATGGCAAAGGCGCGGGGC GTGTACATGGAGAGATTTTCCTTGGCGAATGCCTGCATCCTAGGCAGGCTAATGGTCTGTTGTAAGAGCCATTGATGAGCAATTTCATAGGTCCATTGTC
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| DNA Sequence for Gene |
>BW33_RS02610
ATGCCCGAATCGCCCACGCTGTCCATGCCGTTCAATCCGGCCGGTATCGAGCTCGACCGCCGTCAGGGTTTGAGCCGTCAGCTCTATCAGGCGCTGCGTC TGCGGGTGCTGGACGGGCGTCTGGCCAGTGGCACGCGGCTGCCGGCCAGCCGTGATCTGGCGGCGGCCTTGGCGATTTCCCGCAATAGCGTGGTGCGCGC CTACGATCAGTTGTACGCCGAAGGCTTCATCGAAGGCCGGGTCGGGGATGGCACGTATGTCGCCCAGTTGCCGCAAAGCGTATTGCCCAAGGAAAAACTA TCCACAAAAGTATCCACAGGGTTTTCAACAGGCTTACCCACAACCTTATCCACAAATTGGCTGGATTTACCTGTAGTTCCATCCAGTAAAGTTATCCACA GCGACGCATTGCAGCGGGTTGAAAACAATCATCTGGCCCTGCCGCCCTGTGGTCCGCCGCGCGCTTTTCGGGTCGGCGTTCCAGCCTTCGATCTGTTCCC GTTTGACGTCTGGGCCAAGCTGAATGCGGCTTTCTGGCGCAAGCCGGATTTGCAGCAGTTGTGTTATGGCGATCCGGCGGGCGATGCGCGGTTGCGCGGG ATGATCGCGGCCTATTTGCGCAGCTCACGGGGCATGCAGTGCACGGCTGAGCAAATTGTGATCACCAGTGGCGCACAGCAGGGCATAAGCCTTTGTGCAC AGTTGCTGGTAGAGCCGGGCGACGGCGTAGCGATTGAAAATCCCGGGTATCGAGCAGCCGGTCATGCCTTCGCCGTGGCCGGTGCCCGGCTGCACGGGGT GGCGGTGGACAGCGAGGGTATCGACTGCCAGCAACTGGCGGGACTCACCGATTGCCGCCTGACCTATGTCACGCCATCCCACCAGTACCCCACCGGGGTG GTGATGAGTCTGGCCCGCCGCCTCGAATTGCTGGCCTGGGCCGAGCGCACGCAGGGCTGGATCGTCGAGGATGATTACGATGGCGAGTATCGCTACAGCG GCGCTCCGCTGGCGCCGTTGGCTGCCCTCGATCGACAGGGGCGAGTGCTGTATGTCGGCACGTTCGGCAAGGTCGCGTTCCCGGCGTTGCGCCTGGGATA TCTGGTGTTGCCGCCGGGGTTGGTGGAGGCATTTGCGCAAAGGCGTGCGGTGGATGTGCGTCATTCCGAAGTCAGCACCCAGGCGGTGATGGCCGAGTTC ATGGCCGCCGGGCATTTCCAGCGGCACATCCGACGCATGCGCCGCGCGGCGCTGAGCCGACGCAATGTCCTGCTCGGTGGCTGGCCGCAGAATATTCCGG GCGTCGGCCAGTTGCCCGGCGTTGCCGCCGGGCTGCACCTGACCGTGCCGGTCGCCAGTGTGACGCGTGAAAGCCAACTGATCGAACTGGCGCGCAGTGT CGACGTCGAGATCAATGGTCTGAGCAGTTATTGGCTGCCTGATTCCACGACCCCGGTCGACCAGCGCGCCGGACTGGTGCTGGGCTTTGCCGCGGTGCCT GAGCGCGCAATCGAAGCGGCGCTCGAACGTTTGCGAACCGTGTGGCACACCCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGGGCGCAGATCGATGCGCCCGACGGCGGTATCACGCTTGTACTTCGAGTTGCAGGAACAGGCTCGGATCGCCAATCCGGCGCAGCACGTAATCAATT GGCGTCAGGTTTGTGAGGGCCTGTCGACGCTCTGCGCTGAGGGTCTTCAAATGCGCATCGGCGATTTTCAGGTGCGCCGCGGTGAATTGTTCCGGCGCGG CTTCGGGCGAGTCGTAGTGAAAATGCGCGAGCCATAACGGCTGGTCATGGTGGGTGCTGTCGAGTATCTGATACTCCTGAAAATAATCCTGGCGCTTTTT GGTCTTGATCCGGCCCAGGGCGTTCCTGACGATGCGTACCTGGTGATTGTCCAGCAACCATTGCAAATAGGCTTGTCGAGGCTGACGATCCTTGAGCAGA CTGGCGCGCACGGCGATGCCTTGAGCGCGTAACCGGAGCGCAGCACTGTTGAGTTCCGCACTCAAGTTGCCCACCGGCAACCGCGTGCCGCCGGAGGCGA
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| Amino Acid Sequence |
>GntR family transcriptional regulator
MPESPTLSMPFNPAGIELDRRQGLSRQLYQALRLRVLDGRLASGTRLPASRDLAAALAISRNSVVRAYDQLYAEGFIEGRVGDGTYVAQLPQSVLPKEKL STKVSTGFSTGLPTTLSTNWLDLPVVPSSKVIHSDALQRVENNHLALPPCGPPRAFRVGVPAFDLFPFDVWAKLNAAFWRKPDLQQLCYGDPAGDARLRG MIAAYLRSSRGMQCTAEQIVITSGAQQGISLCAQLLVEPGDGVAIENPGYRAAGHAFAVAGARLHGVAVDSEGIDCQQLAGLTDCRLTYVTPSHQYPTGV VMSLARRLELLAWAERTQGWIVEDDYDGEYRYSGAPLAPLAALDRQGRVLYVGTFGKVAFPALRLGYLVLPPGLVEAFAQRRAVDVRHSEVSTQAVMAEF MAAGHFQRHIRRMRRAALSRRNVLLGGWPQNIPGVGQLPGVAAGLHLTVPVASVTRESQLIELARSVDVEINGLSSYWLPDSTTPVDQRAGLVLGFAAVP ERAIEAALERLRTVWHTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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