Pseudomonas sp. RIT288, BW33_RS00435

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT288 contigs1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGCCCTCACAGTGAACTCGTCGGTGCGTTGTATCGCGACCATCGCGGTTGGCTGCTGAGCTGGTTGCGGCGCAATGTGGCGTGCCCACAACGGGCCGAAG ACTTGAGCCAGGACACCTTCGTGCGTCTGCTCGGTCGCGATGAACTGCTGACGCCGCGCGAACCACGGGCATTTCTGGTGGCGATCGCCAAGGGCCTGCT GTTCGACTACTTCCGCCGCGCCGCGCTGGAGCAGGCCTACCTCACCGAGTTGATGCTGATCCCCGAAGGCGAACAACCTTCGGTGGAAGAGCAGCAACTG ATCCTCGAAGACCTCAAAGCCATCGACCGTCTGCTTGGCAAACTGTCGACCAAAGCCCGCACCGCTTTCCTGTATAACCGCCTCGACGGCCTCGGCCATG CCGAAATCGCCGAGAAGCTCGGGGTCTCGGTGCCCCGCGTGCGGCAGTACCTCGCGCAAGGCATTCGCCAGTGCTACATCGCCCTGTACGGTGAGCCGAC
DNA Sequence for Gene
>BW33_RS00435
ATGAACCCGGCCAGCTCCAGACCGGTCTCGGCGCAGGTGCTGGACGCGGCGATTGCCTGGCAATTGTCGCTGGATTCCGGCAGTCCACTGGAACGCGAGG AGTTTGCCAAGTGGCATGCGGCCCATGAAGAACACGCCCGCGCCTGGCGCCAGCTAGGCATGCTCGATCAGCGTTTCAGCGTCGCCAACGGCCCGGCCCG CGCGGCCTTGCTGCAATCGCGCGAAGGCATTCGACGCCGTGTGCGCAAGCTCGGCAGTGGATTGGCCAGTGTGGTGGCGGTGATCGGTCTCGCGCTGTTT GCCGGTGATCGCTACTTGCCGCTGGATTACTGGCTCGCCGATCAACGCACCGCCACCGGTGAGCAGCGCACGGTGCGCCTGGCCGATGGCACCGTGCTCA ATCTCAACACCCACAGCGCGGTGGATGTGCGCTTCGATGCCAGGCAGAGACTGATCGTATTGCAGGAAGGCGAGATCATGGTCGAGACCGGTCACGGCGA TGCGCGGCCGTTCATCGTCGAGACCCGCGAAGGCAGCATGCGCGCGTTGGGCACGCGGTTTCTGGTCAAGCGTGAAGACCAAGGCACGCGTCTGAGCGTC CTGCAATCGGCGGTAGCGGCGCATCCGCAAAACCATCCTGAAGAGCAGATCCTGCGCGAAGGCCAGCAAGTGCTGATCCGCAATGACGGCCTCGACGCGG TCGCCGCGCTCACGCCCGGCGCCGATGCCTGGACCCGGGGCATGCTGGTGGTGGACAACGCGCGACTGGAAGATCTGGTGCATGAATTGGCTCGTTATCG CCGAGGGCATCTGGGCGTGACGCCGGAAGTCGCTGACCTGCGCATCACCGGCAGCTTCCCGCTGCACGACACCGACAAGGCCCTGAGCGCCCTGCTGCCG ACCCTGCCGGTGCAGATCGAGCAGCACACGCCGTATTGGGTCACGGTGGCGAAGGCTGATACCAAGCCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTTATCTGGTGCCTGACAAATCGCTTTCGCGAGCAGGCTCGCTCCTACAGTTGGAATGCGTTCCCCCTGTAGGAGTGAGCCTGCTCGCGATAGGGCCACC CGCCGCACTCGAAAATTCCGAATCGGCCGCCCCACTCTCAGTTAATCGAAATTATTTTCATCCAGCCCTATCACTTTTCAATTCTCGTCCGGCACACAGG CAATTGAGAAATATTTCCATTCAGGAGCCTTCGCATGTCCCGTTCGCTAGACACCTTGTTGCGCCCCAGTCTGTTGGCGGTCGCCATTGCCCTCAGCGCG CCGCTGATCAGCAACCCGTTGCTCGCCGCTGAACAGGCGTCCAGCGTACGCGCCTACAACCTGCCGGCCGCTTCGTTGTCGACGACGCTGAATCAGATCG CCAGCCAGGGCGGCCTCGCGCTGTCGCTGAACCCGTCGCTGGCCGCCGGCAAGACCTCGGCACCGGTCAGCGGCCAATACGATGCCGCCGGGGCACTGCG
Amino Acid Sequence
>amino acid ABC transporter substrate-binding protein
MNPASSRPVSAQVLDAAIAWQLSLDSGSPLEREEFAKWHAAHEEHARAWRQLGMLDQRFSVANGPARAALLQSREGIRRRVRKLGSGLASVVAVIGLALF AGDRYLPLDYWLADQRTATGEQRTVRLADGTVLNLNTHSAVDVRFDARQRLIVLQEGEIMVETGHGDARPFIVETREGSMRALGTRFLVKREDQGTRLSV LQSAVAAHPQNHPEEQILREGQQVLIRNDGLDAVAALTPGADAWTRGMLVVDNARLEDLVHELARYRRGHLGVTPEVADLRITGSFPLHDTDKALSALLP TLPVQIEQHTPYWVTVAKADTKP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site