Pseudomonas sp. RIT288, BW33_RS00250
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCGTTCGTCTGTACTAATACACAGACGATCGTAGCAAGCTTCTTGCCTAAGCCCGGCCCTCAGCCGGGCTAATGGCATTTGCGTAAAACGCTTGATGC TTCACCGTCGAAGCCGCACACGCGACCGAGACAAATCCGCTTCACGCGTCAGACCTGGCTCTTTTGCCAGCGGTGCACGTCTTTTCTGACGAGCCTTTCA AGGCTACTGACGAGCACACCCACTGATTCCTCTCACGACGATCAGCCCAAGGCACCTGCATGCGTGCCCGCTTTATTGAGCTATCCGAGGCCCTTTATCG GCCGTCAGCGGATTCAGCGCAACACTTTCAAATAGTCGAAGACTGATTGGTACTAACGTCAGTGGATTTTCGGCAGATACACTTCCCGACAGCGATCACG CAAACGACACCGGTCGAGCCGCCCATTTTGTGCGCTTCACTCAAGACCTGCGTCCGGCCGCCCTTCGCATCGGACTCATTACAGCACAGACGAGAACGCC
|
|
| DNA Sequence for Gene |
>BW33_RS00250
ATGGCCGGGCTGATTCCCCAGAGCTTTATTGACGACCTCCTGAACCGCACCGACATCGTCGACGTGGTCAGCTCGCGCGTGCAACTGAAAAAGGCCGGCA AGAACTACACCGCCTGCTGCCCGTTCCATAAAGAGAAAACCCCGTCGTTCAGCGTCAGCCCGGACAAGCAGTTCTATTACTGCTTCGGTTGCGGCGCCGG TGGCAACGCCCTCGGCTTTCTCATGGACCACGACAACCTGGACTTTCCCCAGGCTGTCGAGGACCTGGCCAAAGCCGCCGGCATGGAAATCCCCCGCGAA GAAAGCGGCCGCCCGCACAAACCGCGACAGCCAACCGATTCGCCGCTGTACCCGCTGCTCACCGCCGCCGCCGACTTCTACCGCCAGGCGCTCAAGAGCC ATCCGGCGCGCAAGGCTGCGGTGGACTACCTCAAGGGCCGCGGCCTGACCGGCGAGATCGCCCGGGACTTCGGTCTCGGTTTTGCGCCGCCGGGCTGGGA CAATCTGTTCAAGCATTTGAGCAGCGACACTTTGCAGCAGAAGGCCATGATCGACGCCGGCCTGCTGATCGAGAACGCCGAGACCGGCAAACGCTATGAT CGCTTCCGCGATCGCGTGATGTTCCCGATCCGCGATACCCGTGGCCGGATCATCGCTTTCGGTGGCCGGGTACTGGGTGATGACAAGCCGAAATACCTGA ACTCGCCGGAAACCCCGGTATTTCATAAAGGCCAGGAACTCTACGGCCTCTATGAGGCACGCAAGAACAACCGCAACCTCGACGAAATCATCGTCGTCGA GGGTTACATGGACGTCATCGCCCTCGCCCAGCAGGGCTTGCGCAATGCCGTCGCGACCTTGGGCACAGCGACCAGCGAAGAACACCTCAAGCGCCTGTTT CGTGTCGTGCCGAACGTCTTGTTCTGTTTCGACGGTGACCAGGCCGGCCGCAATGCTGCATGGCGCGCACTGGAAGCGACACTGCCGTGCCTGCAGGACG GGCGCCGCGCGCGCTTTCTGTTTCTGCCCGAAGGCGAAGACCCGGACACCCTGGTTCGCGCCGAAGGCACTGATGCCTTCAAAGCCCGAATCAACCAACA TGCGCAGCCGCTGGCAGATTATTTCTTCCAGCAACTGACCGAGGAAGCCGATCCGCGCTCGCTCGAGGGCAAGGCCCATATGGCCACCCTCGCCGCGCCG CTGATCGACAAAGTGCCGGGCGCCAACCTGCGCATCCTGATGCGCCAGCGCTTGACCGAAATTACCGGTCTGAGCAGCGAAACCGTCAGTCAGCTGGCAC AAAGCGCGCCGCAGGAAGCGCCGCCCGCGTACGATCCGGGCATCGATTACGACGCAATGCCGGATTACAGCGACTACCATCAGCCGCAGGCACAAGACAT GTATGTGCCGCAGCAGGAGTGGACGCCGAAGAAACCCGGCGCCGGCGGCAAGAAATGGGACAAGAAACCCTGGGACAAGAACGGCAAGCGTGGCGGTGAT CGCGACCAACAGCGCCCGCGTACGCCGATTGGCGTCGAATCACCGACCCTGACCGCCCTGCGAACATTGCTGCATCACCCGCAACTGGCCGAGCGCGTCG AAGACGCCGGGCACATTGCGGATGAAAATCAGACCAATGCACAGTTGCTTGTGGCACTGCTCGAAGCCGTACAGAAGAATCCCAAGCTAAACTCATTTCA GTTGATCGCGCGATGGCACGGCACTGAACAGGGTCGCCTGCTCAAGGCACTGGCGGAAAAGGAGTGGCTGATTGACGGAGAAAACCTTGAACAACAGTTT TTCGACACCATTACTAGCTTGTCAGCCCGCCAACGCGAGCGAAATCTGGAACAGTTGCTCAGGAAAGCGCGTCAAAGCGAACTGAGCGCCGAAGAGAAAA ATCAACTGCGCGACCTTTTAAGTCGCAATGTTTCCGCATCAAACCCGACCTCAACTGGCGCGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGTCATAGCTCAGGTATAATCCTCGGCTTGTTTTTTGCCCGCCAAGACCTTCAGTGGATAGGGTGTTATGTCCGGAAAAGCGCAACAGCAGTCTCGTATT ATTGAGTTGATCAAACTGGGTCGTGAGCAGAAGTATCTGACTTACGCCGAGGTCAACGACCACCTGCCCGAGGATATTTCAGATCCGGAGCAGGTGGAAG ACATCATCCGCATGATTAACGACATGGGGATCCCCGTACACGAGAGTGCTCCGGATGCGGACGCCCTTATGTTGGCCGACGCCGATACCGACGAGGCCGC TGCGGAAGAAGCAGCCGCCGCGTTGGCAGCGGTGGAGACCGATATCGGTCGCACCACTGACCCAGTGCGCATGTACATGCGTGAAATGGGTACGGTCGAG CTTCTGACTCGTGAAGGCGAAATCGAAATCGCCAAACGTATCGAAGAGGGCATCCGTGAAGTGATGAGCGCTATCGCGCACTTCCCTGGCACGGTTGACC
|
|
| Amino Acid Sequence |
>DNA primase
MAGLIPQSFIDDLLNRTDIVDVVSSRVQLKKAGKNYTACCPFHKEKTPSFSVSPDKQFYYCFGCGAGGNALGFLMDHDNLDFPQAVEDLAKAAGMEIPRE ESGRPHKPRQPTDSPLYPLLTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTLQQKAMIDAGLLIENAETGKRYD RFRDRVMFPIRDTRGRIIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLF RVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDPDTLVRAEGTDAFKARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAP LIDKVPGANLRILMRQRLTEITGLSSETVSQLAQSAPQEAPPAYDPGIDYDAMPDYSDYHQPQAQDMYVPQQEWTPKKPGAGGKKWDKKPWDKNGKRGGD RDQQRPRTPIGVESPTLTALRTLLHHPQLAERVEDAGHIADENQTNAQLLVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAEKEWLIDGENLEQQF FDTITSLSARQRERNLEQLLRKARQSELSAEEKNQLRDLLSRNVSASNPTSTGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|