Pseudomonas sp. PTA1, EW80_RS17555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00021.21_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGCCAGATTCACCGCCAACCACCCATTCACCGCCGCTTCCCCAGCCTCGGCAAATACCCTCTCGAGCAATTTCACCTGCTCACGGCGCAGCGCTTGCT CGAACTTCGCACCTTCGGCCGTCAACTCAAGCAGGCGCTTACGCTTGTCCGTCTGCGAAGCGACACTGTCGACCAGGTGCATCTCCTGCAACTGGCGCAG TGGCATGTTCAGCGCCTGTTTGCTCACGCCGAGTAAAGCGAGCAACTCTTTCACGCTGAGGTTCGGATAGCGCGCGATGAAAAACACGATGCGCTGATGC ACCCGCGAGAGGCCGCGGCGCTCGAGCATTTCATCCGCCTTGGCAGTGAACGCCTGATAGCCGAAGAAAAACGCTTCCATGGCCTGTTGCTGAGTGGAGG GGTTCTTAAGGTCAAGCATGTTGACGTACTCGCTCAAGCTGTCGTAATTTCAGTCAACAAGTTTGACTCATTTCCTGCATGCCTTGCTACGGTGACCTCC
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| DNA Sequence for Gene |
>EW80_RS17555
ATGGCTTTTTCCGAACGTGTCTCGCGCCTTAAAGGTTCTTTGATCCGAGAAATCCTCGCGGCGGCCCAGCGTCCGGAGGTCATGTCGTTCGCTGGCGGCT TGCCCGCTGAGGCGATGTTGCCAAAAGTGGAATGGGCCGAGATGCCGTTATCGCTGGGTCAGTACGGCATGAGCGAAGGCGAGCCGGCCTTGCGCGAAGC TTTGGCGGCAGAGGCGAGGGCGCTGGGCCTCGAGTGCGATGCGAGTCAGATGCTGGTGGTCAGTGGTTCCCAGCAAACTCTGGATCTGGCGGCAAAACTG TATATCGACAAGGGCACGGAAATTTTGCTGGAGGCGCCGACTTATCTGGCCGCGCTGCAAATCTTCCAGCTTTTCGGCGCCGATTGCCTGACCGTGCCGC AAGAAGCCGACGGCCCCAACCTCGCGCAATTGCGTAATCGTTTAGAACAGCATCGCCCGGCGTTTATCTACCTGATCCCGACGTTCCAGAATCCATCCGC CGTGCGCTACAGCGAGGCCAAGCGCGCAGCGGTTGCGGCATTGCTCGATGAATTTGGCGTCACCCTGATCGAAGACGAGCCATACCGCGAACTGACTTTC GATGGTGGCAGCGCAAAACCGATTGCGGCGCGCCTGAAAAAAGCCAGCTGGATCTACACCGGCACCGTCTCGAAAACCTTGCTCCCGGGTTTGCGTGTCG GTTACTTGATCGCCAGTCCGGATCTGTTCCCGCACCTGCTCAAGCTCAAGCAATCGGCGGATCTGCACACCAATCGCATCGGTCAGTGGCAGGCGCTGCA ATGGATCGGCTCAGAGAAGTATCACCAGCATTTAAGTGAGTTGCGGGATTTCTACCGGCAGCGGCGAGATGCGTTTCAGTTGGCGCTGGAAGAGCATTTT GCCGATCTGGCTGAGTGGAACATGCCCCAGGGCGGGCTGTTCTTCTGGCTGACGCTGAAGCAACCGCTGGATACGCGCACTTTGCTCAACGAGGCGTTGG CCAATGATGTGGCATTCATGCCCGGTGAACCGTTCTTTCCCGAGCCGGACAAGCATCATGGGCATTTGCGCCTGAATTTCAGCCACATCGATCCGGCGCG GCTGGATGAAGGGTTGAAGCGGTTGGCGGCGGTGGTGCGGCGGGCGCAGATGGAGAGGGCGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAAGCAATAAACCGGCTGGAGGGCCGATTTATCATTGTCTGAGTTTTGTGATGATTTGACGGGCCTCATCGCTGGCAAGCCAGCTCCCACAATTCTTGTC TACAACCTGAGATCAATGTGGGAGCTGGCTTGCCAGCGATGGCGCCATCAGCCACAGCACACCAATGTCAGACTGCCGCAAACCGCTTATCCAGATAATC AATAATCACCTTGGATTCATACATCCAGGTTGTCTGCCCGTTCTCTTCAATTCGCAGGCAAGGCACTTTGATTCGGCCACCCTGTTCCAGCAGGGTCTGG CGATCCTGCTCGTTGTTCTTCGCGTCTTTCAGCGCCACCGGCACATTCAGGCGATGCAGGGCGCGGCGGGTTTTCACGCAGAACGGGCAGGCGTGAAATT GATACAGGGTCAGATCTTTCGCGGCAGCGTCGACTTGTGCCTGAGCGGCAGCGGGGCGTTTGGTCTTGCCCGGGCGGGTGATGAAATCGATGAAGATAAC
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| Amino Acid Sequence |
>GntR family transcriptional regulator
MAFSERVSRLKGSLIREILAAAQRPEVMSFAGGLPAEAMLPKVEWAEMPLSLGQYGMSEGEPALREALAAEARALGLECDASQMLVVSGSQQTLDLAAKL YIDKGTEILLEAPTYLAALQIFQLFGADCLTVPQEADGPNLAQLRNRLEQHRPAFIYLIPTFQNPSAVRYSEAKRAAVAALLDEFGVTLIEDEPYRELTF DGGSAKPIAARLKKASWIYTGTVSKTLLPGLRVGYLIASPDLFPHLLKLKQSADLHTNRIGQWQALQWIGSEKYHQHLSELRDFYRQRRDAFQLALEEHF ADLAEWNMPQGGLFFWLTLKQPLDTRTLLNEALANDVAFMPGEPFFPEPDKHHGHLRLNFSHIDPARLDEGLKRLAAVVRRAQMERAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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