Pseudomonas sp. PTA1, EW80_RS16345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00016.16_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCGTGACTTCCGAGCTTAAAACCGCCTTCCAGATCGGCTTCATGATCTTCATTCCGTTCCTGATCATCGACCTCGTCGTGGCGAGCGTGCTGATGG CCATGGGTATGATGATGCTCTCGCCGCTGATCATCTCGCTGCCGTTCAAGATCATGCTGTTCGTGCTGGTCGATGGCTGGGCGCTGATCATCGGTACTCT GGCCAGCAGTTTTGGAGGTGTTTCGCCATGACGCCGGAAGTCGCGGTCGATATCTTTCGTGAAGCCCTGTGGCTGACCACCATGATGGTTGCCATCCTGG TGGTGCCGAGCCTTCTGGTCGGCCTGCTGGTGTCGATGTTCCAGGCTGCCACGCAGATCAACGAACAGACCCTGAGCTTCCTGCCGCGTCTTCTGGTGAT GCTGGTGACCCTGATCATCGGCGGTCCGTGGATCGTGCAGACGTTCATGGAATACATCATCCAGCTGTACAAAAACATTCCGATGGTCATCGGCTAAGCC
|
|
| DNA Sequence for Gene |
>EW80_RS16345
ATGCAATCGTTGCTTCAGCTGACCGACACCCAGATCAGCACCTGGGTGGCGTCGTTCATGTTGCCGCTGTTTCGCGTGGCGTCGATGCTGATGGTCATGC CGGTGTTCGGCACCACCCTGATTCCGCGTCGCGTGCGCCTGTATTTCGCCGTGGCGATCACCGTGGTCATCACCCCGGCGCTGCCGCCGATGCCCGCCGT CAGCCCGCTGGATCTCAGCGGCCTGTTGCTGATCGGCGAGCAGATTCTGGTTGGCGCCGTGCTCGGCTTTTCCCTGCAACTGTTCTTTCAGGCGTTTGCC GTGGCTGGACAGATCGTCGCGATCCAGATGGGTATGGGCTTCGCCTCGATGATCGACCCTACCAACGGCGTTTCGGTGGCGGTGATCGGGCAGTTCTTCA CCATGCTGGTGACGTTGCTGTTCCTGTCGATGAACGGCCATCTGGTGGTGTTCGAAGTCCTCACTGAAAGTTTCACCACGCTGCCGGTCGGCGGCGGTTT GATGGTTGCGCATTACTGGGAACTGGCCGGCAAACTCGGCTGGGTCCTCGGCGCCGCATTGCTGCTGGTGTTGCCGGCCGTCACCGCACTGTTGGTGGTC AACATCGCCTTCGGCGTGATGACCCGCGCCGCGCCGCAACTGAACATCTTCTCGATCGGTTTTCCGCTGACCCTGGTGCTCGGCCTGTTCATCGTCTGGG TCGGTCTTGCGGACATTCTCAACCAGTATCAACCGCTGGCCAGCGAGGCCTTGCAGTTGCTACGCGAACTGGCACGGGCGCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTCATGGCAGAGAGCGAAAGCGGTCAGGACAAAACGGAAGACCCCACGGAGAAACGCAAAAAGGACTCCCGTGAGAAGGGTGAAATCGCCCGTTCCAAAG AGCTCAACACCCTGGCCGTGATGATGGCCGGCGCCTCTGCGCTGCTGATTTTCGGCGGCATGCTTGCGCAAGAAATGATGGACGTGATGCGCCTGAACTT CACCCTGTCCCGCGAAGTGGTCATGGATCAGGGCGCCATGGGCCGTTTTCTGTTGGAGTCAGGGTTGATCGCCTTGCTGGCGATTCAGCCGGTGATGATA ACCCTGTTGCTCGCCGCCATCATCGGGCCAATCTCCCTTGGTGGCTGGCTGTTCGCGGCAAGTTCGCTGGCACCCAAATTCAGCCGGATGAACCCGGCCG CCGGCCTCAAACGGATGTTCTCGTTCAAGGCTGTGGTTGAACTGCTCAAGGCATTGGCGAAGTTTCTGATCACCTTGGGCGTGGCGCTGTTGGTGTTGTC
|
|
| Amino Acid Sequence |
>flagellar biosynthesis protein FliR
MQSLLQLTDTQISTWVASFMLPLFRVASMLMVMPVFGTTLIPRRVRLYFAVAITVVITPALPPMPAVSPLDLSGLLLIGEQILVGAVLGFSLQLFFQAFA VAGQIVAIQMGMGFASMIDPTNGVSVAVIGQFFTMLVTLLFLSMNGHLVVFEVLTESFTTLPVGGGLMVAHYWELAGKLGWVLGAALLLVLPAVTALLVV NIAFGVMTRAAPQLNIFSIGFPLTLVLGLFIVWVGLADILNQYQPLASEALQLLRELARAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|