Pseudomonas sp. PTA1, EW80_RS15545

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PTA1 EW80DRAFT_scaffold00015.15_C, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGGCGACAACGCCGCCGCAGTCAAGCTGACCCTGGAAGACGGCAGCCAGTACAAGCTCGACGGCAAGCTGGAATTCTCCGAAGTCTCGGTTGACCAGAC CACCGGCTCGGTGACCCTGCGCGCCGTGTTCCCCAACCCCGATCACACCCTGCTGCCAGGCATGTTCGTCCACGCCCAGTTGCAGGCCGGCGTCAACAGC GCAGCGATCCTCGCGCCACAGCAAGGCGTGACCCGCGACCTCAAAGGCACCCCGACCGCACTGGTCGTCGGCGCCGACAACAAGGTCGAGCTGCGTCAGC TCAAGGCCAGCCGCACCGTCGGCAGCCAGTGGCTGATCGAAGACGGCCTGAAAGCCGGCGATCGTCTGATCACCGAAGGGCTGCAGTACGTCAAACCGGG CGTCGAGGTCAAAGCGACCGAAGCGACTAACGTCGGCACCAAGAACCCGGCCCCCGCACAGGCAGCTGACAAAGCCGCCGGCGGCAAAGGGGAGTAACCC
DNA Sequence for Gene
>EW80_RS15545
ATGTCAAAATTCTTCATCGACCGTCCGATTTTCGCCTGGGTAATTGCCCTGGTGATCATGCTGGTCGGGGCACTTTCGATCCTGAAATTGCCAATCAACC AATACCCGAGCATCGCGCCGCCGGCCATTGCGATCCAGGTAACCTACCCAGGTGCTTCCGCACAAACCGTGCAGGACACCGTGGTACAGGTCATCGAGCA ACAGCTCAACGGTATCGACAACCTGCGTTATGTGTCGTCGGAAAGTAACTCCGACGGCAGCATGACCATCACCGCGACCTTCGAGCAAGGCACCAACTCC GACACGGCGCAGGTCCAGGTCCAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCGCAGGAAGTGCAGCAACAAGGTATCCGCGTGACCAAGGCAGTGA AAAACTTCCTGCTGGTGATCGGCGTGGTGTCGCGTGATGGCAGCATGAGCAAGGACGACCTGTCCAACTACATCGTGTCGAACATGCAGGACCCGATCTC TCGGACCGCCGGTGTCGGTGACTTCCAGGTCTTCGGTGCGCAGTACGCGATGCGTATCTGGCTCGACCCGGCCAAGTTGAACAACTTCAACCTGACCCCG GTCGACGTGAAAAACGCGATTGCCGCGCAGAACGTCCAGGTGTCGTCCGGTCAGCTCGGTGGCTTGCCTGCCGTGCAGGGCCAGCAACTGAACGCGACGA TCATCGGCAAGACCCGTCTGCAGACCGCTGAGCAGTTCAAGGAAATCCTGCTCAAGGTCAACAAGGACGGCTCGCAGGTTCGCCTCAAAGACGTGGCTGA AGTCGGCCTCGGCGGCGAGAACTACGCGATCAGCGCCCAGTTCAACGGCAGCCCGGCGTCCGGTCTGGCGGTGAAACTGGCCAACGGCGCCAACGCCCTC GATACCGCCAAAGCGCTGCGCAACACCATCGACAGCCTCAAGCCGTTCTTCCCGCAAGGCATGGAAGTGGTGTTCCCGTACGACACCACCCCGGTGGTGA CCGAGTCGATCAAAGGCGTGGTGCACACCCTGGTCGAAGCGATCGCGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGCGCCACCGTCAT CACCACGATGACCGTGCCGGTGGTACTGCTCGGTACGTTCGGCATCCTCGCCGCCGCCGGTTTCAGCATCAACACCCTGACCATGTTCGGCATGGTGCTG GCCATCGGTCTGCTGGTGGACGACGCCATCGTCGTGGTGGAAAACGTCGAGCGGGTGATGAGCGAAGAAGGCTTGTCACCGAAGGAAGCGACGAAGAAAT CCATGGGCCAGATCCAGGGCGCGCTGGTCGGTATCGCCCTTGTGCTCTCGGCGGTACTGCTGCCGATGGCATTCTTCAGCGGCTCCACTGGTGTGATCTA CAAGCAGTTCTCGATCACCATCGTTTCGGCGATGGCCCTGTCGGTGCTGGTTGCCCTGATCTTCACCCCGGCGCTGTGCGCGACCATGCTCAAGCCGATT CCGAAAGGCGAGCACGGTACTCCGAAGAAAGGTTTCTTCGGCTGGTTCAACCGTAACTTTGACCGTGGCGTACGCAGCTACGAGCGCGGCGTCGGCAACA TGCTGACCCGCAAGGCGCCGTACCTGCTGGCGTATCTGCTGATCGTCGTGGGCATGATCTGGCTGTTCACCCGCATCCCGACCGCGTTCCTGCCGGAAGA AGACCAGGGCGTACTGTTCGCCCAGGTGCAGACCCCGGCCGGTTCCAGTGCCCAGCGCACGCAGGTGGTCGTGGATGAAATGCGTGAGTATCTGCTGCGT CCGAACAAGGACGGCGGTGAAGCGGACGCGGTGGCTTCGGTGTTCACCGTGACCGGCTTCAACTTCGCCGGCCGTGGGCAGAGCTCGGGTATGGCGTTCA TCATGCTCAAACCGTGGGGCGAACGTAACGCCGACAACAGCGTGTTCAAGCTCGCCGCGCGTGCCCAGCAACACTTCTTCAGTTTCCGTGACGCGATGGT GTTTGCCTTCGCCCCGCCAGCGGTTCTGGAATTGGGTAACGCCACCGGTTTCGACGTGTTCCTGCAAGACCGCGCCGGTATCGGTCACGAAAAACTGATG GAAGCGCGTAACCAGTTCCTCGGCATGGCGGCGCAAAGCAAGGTGCTGACCCAGGTGCGTCCGAACGGCCTGAACGATGAGCCGCAGTTCCAGCTGGAAA TCGACGACGAGAAGGCCAGTGCCCTCGGCATCACCATCAGCGACATCAACAACACCCTGTCGATCGCGCTGGGCAGTAGCTACGTCAACGACTTCATCGA CCGTGGTCGGGTGAAGAAAGTCTACGTGCAGGGCCAGCCGGATTCGCGCATGAGCCCCGAAGACCTGAAGAAGTGGTACGTGCGCAACGCCGAAGGCACC ATGGTTCCGTTCTCGGCGTTCGCCAAGGGTGAGTGGGTCTACGGTTCGCCGAAACTGGCGCGTTACAACGGTGTGGAAGCGGTCGAAGTCCTCGGGGCTC CGGCGCCGGGCTACTCCACCGGTGAAGCGATGGCTGAAGTCGAAGCGATTGCCAAGAAGCTGCCGGCCGGTGTCGGTATCTCCTGGACCGGTCTGTCCTA CGAGGAACGTCTGTCCGGCTCGCAAGCGCCAGCGCTGTACGCCCTGTCGCTGCTGATGGTGTTCCTGTGTCTGGCGGCGCTGTATGAGAGCTGGTCGATT CCGATCGCGGTCATGCTCGTGGTACCGCTGGGGATCATCGGTGCACTGATGGCTACCAGCCTGCGCGGTCTGTCCAACGACGTGTACTTCCAGGTGGGCT TGTTGACGACCATCGGTCTGGCGGCTAAAAACGCCATTCTGATCGTCGAATTCGCCAAGGAACTGCATGAACAGGGACGCAGCCTGCGCGAGGCGGCAAT CGAAGCCTGCCGCATGCGTCTGCGCCCGATCATCATGACCTCGCTGGCCTTCGTTCTCGGTGTTGTGCCGCTGGCGATTTCCACCGGCGCCGGTTCAGGC AGTCAGCACGCGATCGGTACCGGCGTGATTGGCGGTATGCTCACGGCCACGATCCTGGCGATCTTCTGGGTCCCACTGTTCTTCGTTACTGTGTCGTCCA TCGGTCAGCGTAAAAAGACCGACGCGGATGAGACTACTGAAACTCCTAAAGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCGCTACTCTCCATCGCAGTCGCTGCCTTCGTGCTGAGCGGTTGCTCGCTGATACCTGACTATCAGCAGCCTGAGGCTCCGGTCGCAGACCAGTA CCCGCAGGGGCCGGCATATTCGCCGGCCCAGGCTCCGGCGCAAGCCGCTGCCGAACAGGGCTGGAAGCAGTTTTTCCATGACCCGGCCCTGCAACAGCTG ATCCAGGTCGCCCTGGAAAACAACCGCGACCTGCGTGTCGCGGCGCTGAACATCGACGCTTACGCGGCGCAGTACCGCATCCAGCGCGCCGACCTGTTCC CGGCAGTGTCAGCCAATGCCGCCGGCAGCCGCCAGCGTCTGCCGGCCCGTGCCTCGCAGACCGGCGAGTCGATGATCAGCAGCTCCTACTCGGCTACCGT CGGCGTCAGCGCCTACGAACTCGACCTGTTCGGTCGGGTGCGCAGCCTGAGCGAGCAAGCGCTGCAACAGTACTTCGCTACCGAAGAAGCACGCCGCAGT
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNS DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSRDGSMSKDDLSNYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNNFNLTP VDVKNAIAAQNVQVSSGQLGGLPAVQGQQLNATIIGKTRLQTAEQFKEILLKVNKDGSQVRLKDVAEVGLGGENYAISAQFNGSPASGLAVKLANGANAL DTAKALRNTIDSLKPFFPQGMEVVFPYDTTPVVTESIKGVVHTLVEAIALVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAAGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKPI PKGEHGTPKKGFFGWFNRNFDRGVRSYERGVGNMLTRKAPYLLAYLLIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAQRTQVVVDEMREYLLR PNKDGGEADAVASVFTVTGFNFAGRGQSSGMAFIMLKPWGERNADNSVFKLAARAQQHFFSFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLM EARNQFLGMAAQSKVLTQVRPNGLNDEPQFQLEIDDEKASALGITISDINNTLSIALGSSYVNDFIDRGRVKKVYVQGQPDSRMSPEDLKKWYVRNAEGT MVPFSAFAKGEWVYGSPKLARYNGVEAVEVLGAPAPGYSTGEAMAEVEAIAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSI PIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQGRSLREAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSG SQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSIGQRKKTDADETTETPKEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site