Pseudomonas sp. PTA1, EW80_RS25315
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00014.14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCTTCGCGCTGATAGATACGCCATAGACCAGTGCAGGTCAGCACTGGCACCTCTGTCACCTGCACCCGCTCGCCATACAACAACTCTTCGCCGCAGG CGCAGTCGTCGATGGGCGTGATGTTGTGGTTGAGGCGCTGGGCATCACTGGCGAGTTCGGTGAAACATTGGCTCATGATGGAAGGGCGGCAGCTAGGGGA ATCCCTGAACCGTACCAGCCAATCTGGCCGGTGAAAGCGCGTAGAAGAAAAATCAGAAAGCGCTGTCAGACGCCGCCTATCAAGACCGGTGAAATGTCGA CAGCGCTGGCCGGATTGCTCGCAAAATCCCAGCATGCGGGCACTTGGTCGAAATCAGAGGTAAAAACAAAACCACCCGGTCAGAAACTGAATCGTGTCGT CCAGCAGATTATTGACGTACGACACTCGTCTAAGGGAAAAGAGGTGCTAGCATAGAGCCACCAGTCGATCTCAGCATGCACCCTAACTAGTAGTCAGGAT
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| DNA Sequence for Gene |
>EW80_RS25315
ATGACCGAGCCAGAAGACCCCAGCCGTGAGCGTCTCAAGCACCACTTTGCCCAGCGGGTAATTCATCAGGCACGTCAGATTCTTGAGATATGGCAGCGCC TGCAACGCAGTGAGTGGTCCACCGTCGATCTTGCCGAACTGAGCGAGGCGAATCTGCGTCTGCTGCGTTTTGCCGAGCGCTTTGAACAGCCGGAACACAC TCAGTTGGCGCATCACATCAGCCAGTCGCTGCAAGCGGTGGATGCCAACCGTGGGCGTCTCAGCAGCGGCCTGATCACCGATCTCAATCGTTTGATGCAG CGCCTGTCGCGCACTGGCCTGCGCCATGGCGATCAGCTCGACCAGACGTTCCTGCCGCCGCTGCGCAAGCCGATCTACGTAATGTTGCAGGATCACGACC GCGCCGAACGACTGGCCAAGCAGCTCGAATTCTTTGGCCTCAGCGCGCAGGCACTGGACAGTGTCGCGGCGTTTCGCTCGTCGATGGTCGAGCGCTTGCC CGCGGCGATTGTCATGGACGTGGATTTCAGTGGCCCCGGCATCGGCCTGAAACTCGCCGCCGAAGCTCAGGTCGGCCTCGAAGAACCGCTGCCGCTGCTG TTCTTCAGCCTGCACGAAACCGACACCCCGACCCGCCTCGCCGCCGTGCGCGCCGGTGGCCAGGAATTTCTCACCGGCACGCTCGAAGCATCGAGTCTGC TGGAAAAAATCGAAGTGCTGACCTGCGTCGCCCAGTACGAGCCTTATAAAGTGCTGATCATCGACGACTCGCGCGCCCAGGCCCTGCACACCGAGCGCCT GCTCAACAGCGCCGGGATTGTCACACGCACCCTGATCGAACCGATTCAGGCAATGGCCGAGCTGGCGGATTTCCAGCCGGACCTGATCATCCTCGACATG TACATGCCGGCCTGCACCGGCACCGAGCTGGCCAAAGTGATCCGTCACAATGACCGCTACGTCAGCGTGCCAATCATTTACCTGTCGGCCGAGGACGATC TGGACAAGCAGCTCGACGCCATGAGCGAGGGCGGCGATGACTTCCTGACCAAGCCGATCAAACCGCGGCACCTGATCACCACTGTGCGCAACCGCGCCGC TCGGGCGCGCAACCTCAAAGCACGGATGGTCCGCGACAGCCTCACCGGCCTGTACAACCACACGCACATCCTGCAATTGCTCGAAGACTGCTCGTTCCGC GCCCGCCGCGAGAACAAACCGCTGAGCTTTGCCATGCTCGACATCGATCACTTCAAACGGGTCAACGACAGCCACGGCCACCCCATGGGCGACCGGGTGA TCAAGAGCCTGGCGCTGTTTCTCAAGCAGCGGTTGCGCAAGACCGATTTCATTGGCCGATACGGCGGTGAAGAGTTCGCCATTGTCATGCCCGACACCGA TATCGACGCGGCGCACAAAGTCCTCGACGAGATTCGCCAGCGCTTTGCCGAGATTCATTACCCGGCACAGCCGCAGGACCTCTGGTGCACGTTCAGCGCC GGCGTAGTAGAAATGTGCGATGACTCCGACAGCCTGATGATGGCCAGCCAGGCCGATGAGGCGCTGTATCGCGCCAAGGGTGCAGGACGCAATCGGGTGC AGACCGCGCGCCAGTCAAAGCAAAGTGCCACTTTTTCATCGGAATCCACTGATTCGGTCATAACTTTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGAACCGCAATAAATTCAGGCGCTTACCATTCCTGCCGTTGGTAGCCGTCATGCGCCTGAAGTTGCTCACCAATCTCAACACTCTGCTGCTGGTCGCCG TCTGCGTGGCCCTTGGCGCCACGCTGTGGTGGTCGCAAAAAGCCCTCGAACGACCCTATCTTTTGATGGAGCGTTACCTGGGGCTGTCGCAACAATTTCA GAATGAAGTAGCGCGCAACGTCGAGGATTATCTGGCCAGCGGTGACGCGCTGCGCCTGAGCAGCGCCGCCCAGGCTATCGACAGCGTGCAAAAGCAACTG GGTGACTTGCCCCCGGCGCTGGCCGACACCGTACGGCCAAGCCTGTCGAGCCTTGATGAGTTCAGCAAAACCGACCTGCTCGCCGCCGGCAAACTGGCTG GCGATCCGCAGGCGCTGCTGTTGCAGGCCGAACGCGAACTCAGCGCCAGCCTCGACCAGCTCAATACCTACGCCAATGGCAACGCGACTTATCTCGCGCC
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| Amino Acid Sequence |
>diguanylate cyclase
MTEPEDPSRERLKHHFAQRVIHQARQILEIWQRLQRSEWSTVDLAELSEANLRLLRFAERFEQPEHTQLAHHISQSLQAVDANRGRLSSGLITDLNRLMQ RLSRTGLRHGDQLDQTFLPPLRKPIYVMLQDHDRAERLAKQLEFFGLSAQALDSVAAFRSSMVERLPAAIVMDVDFSGPGIGLKLAAEAQVGLEEPLPLL FFSLHETDTPTRLAAVRAGGQEFLTGTLEASSLLEKIEVLTCVAQYEPYKVLIIDDSRAQALHTERLLNSAGIVTRTLIEPIQAMAELADFQPDLIILDM YMPACTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIKPRHLITTVRNRAARARNLKARMVRDSLTGLYNHTHILQLLEDCSFR ARRENKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPDTDIDAAHKVLDEIRQRFAEIHYPAQPQDLWCTFSA GVVEMCDDSDSLMMASQADEALYRAKGAGRNRVQTARQSKQSATFSSESTDSVITL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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