Pseudomonas sp. PTA1, EW80_RS25175
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00014.14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGGCAGCGACAGCGTGTCGATTGAGTACAAGGAATTCGGCATCCGCCTGACCCTGACGCCAACCATCATCGGCCGCGACCGCATCGCCTTGAAAGTCG CCCCGGAGGTCAGCGAACTGGATTTCGCCAACGCGGTGAACATCGCCGGCACCACCGTTCCGGCGCTGACCATCCGCCGCACCGACACCAGCGTGTCGCT GGGTGATGGCGAAAGTTTCGTCATCAGCGGTTTGATCAGCACCACCAACAGCTCGCAAGTGAACAAGTTTCCAGGCCTGGGCGACATTCCCATCCTCGGG GCGTTTTTCAAGGGTTCGCAAATCAAACGCGAAGAGCGCGAACTGCTGATGATCGTCACCCCGCACCTGGTCCAGCCATTGGCGGCGGACGCGCGACTGC CGTCGTTGCCGGGCGAAAAACTGCGCAATTACGACCCGAATTTCTATCGCATGTTCTTCCTCGAGAACGGTAACTTCGACAAGCGCAGCGGGTTGTCGCA
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| DNA Sequence for Gene |
>EW80_RS25175
ATGAGCCAGAACCTCAGTCAGACCTTCCTCGCCATCACCCGCAACAGCACCGATCTGGAATGGCTGCAAAGCGCACTCGCGCCCCTGGGCCAGGTGGTCA GCGCCGGTGGCGGCAGCCTCGACGAACTGCTCGCACTGGTCGATGTGACGTTCGCCAATCTGGTCTTCGTCGGTCTCGATCGCGAGCATGTCGTGGCGCA GAGCGCGCTGATCGAAGGTGCGCTGGAAGCCAAGCCGATGCTGGCAATCGTCGCCCTCGGCGACGGCATGGACAATCAGCTCGTACTCAATGCGATGCGC GCCGGCGCACGGGATTTCGTCGCCTATGGCTCACGTTCAAGCGAAGTCGCCGGGCTGGTGCGGCGCCTGGGCAAACGCCTGCCCGCCGTCACTCCCAACA CGCAGCTGGGCGGGCTTACCGTGATGTACGGCGTGCAGAGCAGCTCCGACGGTGCCTTGCTCGCCAATCACATGGCCATGGTGGTGCAGAAGAGCGGCCA GCAAACCTTGCTGCTCGATCTCGGCCTGCCCCGTGGCGACAGCCTGGCGTTGTTGGGGCTGGAGAGTTCGTTTCACTTTGGCGATGCCCTGCGTCATTTG CGCCGGCTCGACGCTACGCTGATCGACAGCGCTTTCACCAGCGCCGACCACGGCCTGCGCATTCTTGCCTACGCCAACACTGACGAGCCGCTGGAAACCA CCAGCGCCGCCGAGCTGTACATGCTGCTCAGCGCCTTGCGCCAGCACTTTCAGCACATTGTCGTGAACCTCACCGGGCAGGCCGACAGTGAGGCATTGCG CACCTTCGTCAGCCATTGCGACAAACTGCTGTGGTACACCGACCAGAACGTACTCAACTGCCGACGCAACCTCGCCGTGCTTAACCAGTGGCGCGAAAAA GGCATGAAACTCGAGCACGGGCGCTTGCTGATCGATCGCTACCTGAGCAACGTCGCGCCGGATGCCGAGACCTTGGGCAAGACCTTCAATCTGGAAGTCA TCGCCGTGCTGGCGTTCAGTCCCGACGTGCGCCTGAACGCGAAAAACCAGGGCGTCAGCCTCTTCGAACTGGCGCCCCGGGAGAAACTCACCCAGAGCCT GCGCACCCTCGGCGAGCGCTTGGCGAAACGCTCCGAAGGCCTGAGCAAACCGAAAGTCACCTGGTTCGACCGTCTGCGAGGCCACTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCAGAAAAACTCTTTGGCGCAACGTCTCACGGAGCGATCGGCAACAGCGATCACGAAGGCCTGAAACTGGTCCTGCACCGCTACATCATCGACGCCAT CGAGGAGTCGGGGAAAAACCTGCTGGAAGGTTCGCGCCAGCAACTGGCGCAGTTCGTCACCGACAAGGTCGCCGAATACATCGCGCGTTTGCACTTGGCG ATCTCGCGCTACGAAATGGAGCGCCTCGGCGAAGAAATCGTCGACGAACTCACCGGATTCGGCCCACTGGAAGTCCTGCTGCGCGACCCGTCGGTGACGG AGATTCTGGTCAACGGCCCGCACCGGGTGTTCATCGAGCGCGACGGCGTACTGCATCAAAGCGATCTGCGTTTTATCGATGCGCATCACGTCGAGCGGGT CATGCAACGCATCCTTGCGCCGCTCGGTCGCCGCCTTGATGAGTCCTCGCCGATGGTCGATGCGCGCCTGCCCGACGGCAGCCGGGTCAACGCGATCATC
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| Amino Acid Sequence |
>pilus assembly protein
MSQNLSQTFLAITRNSTDLEWLQSALAPLGQVVSAGGGSLDELLALVDVTFANLVFVGLDREHVVAQSALIEGALEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLGKRLPAVTPNTQLGGLTVMYGVQSSSDGALLANHMAMVVQKSGQQTLLLDLGLPRGDSLALLGLESSFHFGDALRHL RRLDATLIDSAFTSADHGLRILAYANTDEPLETTSAAELYMLLSALRQHFQHIVVNLTGQADSEALRTFVSHCDKLLWYTDQNVLNCRRNLAVLNQWREK GMKLEHGRLLIDRYLSNVAPDAETLGKTFNLEVIAVLAFSPDVRLNAKNQGVSLFELAPREKLTQSLRTLGERLAKRSEGLSKPKVTWFDRLRGHS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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