Pseudomonas sp. PTA1, EW80_RS14675

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00421
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.2300 - - - 9 229 4.6E-38
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 11 125 2.6E-17
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 202 214 5.8E-5
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 172 228 1.68745E-12
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 169 227 5.78E-13
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 171 223 6.4E-10
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 186 202 5.8E-5
PANTHER PTHR45566 HTH-TYPE TRANSCRIPTIONAL REGULATOR YHJB-RELATED - - 7 225 2.1E-32
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 8 137 9.11E-22
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 172 186 5.8E-5
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 9 124 1.0E-15
CDD cd17535 REC_NarL-like - - 11 129 3.58558E-30
SMART SM00421 luxrmega5 IPR000792 Transcription regulator LuxR, C-terminal 169 226 2.0E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.