Pseudomonas sp. PTA1, EW80_RS13950
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00013.13_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGATTACACCATCGCCGACATCGCCGTGTGGCCCTGGTACGGGCAACTGGTGCGCAACAACGTTTACTCGGCGGCGGAATTTCTCGCCGCGCACGAGTAC ACCCATGTGCAGCGCTGGGCGGAAGAAATCGCCAAGCGGCCAGCGGTCATCCGTGGGCAGCGAGTGAATCGCACCTGGGGTGATGAAGACAGTCAGGTGC CGGAGCGGCATGAGGCGAAGGATCTGGACTGATAGCAAAAACCGCATAACCCTGTGGGAGCGAGCCTGCTCGCGAAAGCGTCGTATCAGACAACGCATCT GTTGAATGACACACCGCCTTCGCGAGCAGGCCCGCTCCCACATTTGCCTGCGGAGGCCATCAAATCCAATTGTGAAAAAATCATTAACTAACTGACTCGT ACGGGTTTATTCCCCCGGAAACTTCCGACATACTAATGCGAATAATTCTTACATTCACTCGCATTAGTTTCGTTTGGGTAAATCTTGGGGAAGCAGATAG
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| DNA Sequence for Gene |
>EW80_RS13950
ATGTCGTTTCACACCATTCACCGCCGCTCGAACCTTTCACCTAACCTCCTCGCACTCGCCATCGGCATGGCCAGCATCGCTCCTGCGTTGGCTGAAGAAA CCGCAGCCACTGCGCCAGCCAATGGCCCGCTGGAACTGCAAGCGACCGAAATCGGCGCTACGCAGATGAGCGGCACCACCGAAGACACGCAGTCCTACAC CACCGGCCCGATGCAGACCGCGACCAAGCTGTCGCTGACCATGCGCGAAACGCCGCAGGCGGTGACGGTGATCACTCGTCAGCGCATGGACGACCAGAAC ATGACCAGCGTCAACGACGTGGTGCGCGGTACGCCGGGGCTGTTCCTCAGCGAGGCCAGCGGTCCGGGCCGGCAGACTTACAAGGCGCGCGGTTTCGACA TCGACAACATCATGTACGACGGCCTGCCCAGCTCGTATTCGCCGTACACCCTGGCGGTGCAACCGAACCTGGCGATGTTCGACCGGGTGGAAATCGTTCG TGGCGCGACCGGCCTGGTCACCGGTGCCGGCAACCCGTCGGCGGCGATCAACATGGTGCGCAAGCGTCCAACCGCTGATCAGCGCGTAACCCTCACCGGC GCCGCCGGCAGCTGGGATGACTACCGTGGCGAAGTCGATGCCTCCAGCCCGCTGAACGAAAGCGGCACCCTGCGTGGCCGGGTAGTGACGTCGTATCAGG GCGCGGACAGTTTCCGCGACAAGGAAGAAAACGATCACGGCCTGTTCTACGCCATCGGTGAAGCCGACCTGAGTGACAGCACCACCGCGACCCTCGGCTT CTCCCGGCAAAACGATCAGACCAACTATTTCTGGGGCGGCCTGCCGATCGGCGAAAACGGCCACCACCTCGACCTGCCTCGCTCCACTTACCCGGGCACC GATTGGGAGAACCGCAAGCTGCAGGTCGACACCGTGTTCGGTGAAGTCGAACACCGTTTCGCCAATGACTGGAAACTGCACCTCGGCGGCTCGACTTCGA CAACCGACGGCGAATTCTCCGGCACGTACCTGTCGCGCTACGACGGCCCGCTGGAAACCACCGCCTACCAATCGCACCACACCGACAAGCAACGCGCCTT CGACGGTTTCGCCAGCGGCCCGTTCGAAGCGTTCGGCCGCACTCACGAACTGGTGGTCGGCGCCAGCAACCGCGTGTACGACGCCACCACCAAGGAATAC TCGCCCTACGACACAGGTCTGCCGATCGCCGCGCCCAAGCCTGACTTCGTCCGCAGTGGCAAATCGCGCAACGTCACCACCCAGGACGCGGTTTACCTGA CCACGCGCTTGAGCCTGGCCGACCCGCTGACGTTGATCCTCGGCAGCCGCCTGGACTGGTATGACTACGACGATCGCAGTGCCGACGGTGACTTCAAGGT CACGCGCAACCTGACCCGTTACGCCGGCCTGATCTACAAACTCGATGACCATCATTCGGTCTACGCCAGCTACACCGATATCTTCACCCCGCAAACCCAG AAGGACCTCGGCGGCAAAGTGCTCGAGCCGATCGTCGGTGAAAACTACGAAGTCGGAATCAAGGGCGAATATTTCGACGGCGCGCTGAACGGCAGCGTGG CGGTGTTCCAGATGGACCAGACCAACCGCGCCACCCAGGCGGCGACCCAGCTCGGCTGCCCGGAACTGACCTGCTACGAAACCTCCGGCAAGGTTCGCGC CCAAGGCGTGGACATGGAACTGCAAGGTGCGCTGACCGAGCAATGGCAAGTCGGCGCCGGCTACACCTACACCCGCGCCCACTACATCAAGGACGAAAAC CCGGCCAACAATAACCAGAAATTCGACACCGACATGCCCGAGCACCTGTTCAAGGTCTCCACCGTGTACCGCTTCAAAGGCCCGCTGGAAAAACTGCGCG TGGGCGGCAACGTCTACTGGCAGAGCCGCATGTACAACGACATCGCTCTGGCCAATGGCGGCAGCTATCGTCTAGAACAGGGCGGCTACGCGGTCACCGA CCTGATGGCCGGTTATGAGGTCAACAAGCACCTCGACCTGCAGGTCAATGCCAACAACATCTTTGACCGCAAGTACTATTCCTCCATCGGCACCGACGTG ACCTGGGGCTCGACCGACAACTACGGCACCCCGCGCAGCTACATGATGACCGCCAAGTACAAGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCGATAGCGCTCAGCAAGCACCGCACAGGGCGCCGGGACTTTTCCCGGCGCCCTTTTTTGCAGGTTCATTAGGCATGGCCGGCAATTACCGATAGTCTC TGGCGACACTTTCGCGAAGCGCCGGCCATGCCCCAGACAGATTTCTCCTCCGACCTCCAGGCCATCGGCAGCATTGACGCTGTGCCTGTGATCCTGAGCA TGGTCAAGCATACGACCGGCATGCGCTTCGCCGCTGTAGCGCGGGTCACCGAGAGCAAGTGGATCGCTTGCGCCGTGGATGACTCGATAGACTTCGGCCT GTTGCCCGGCGGCGAACTGGTACTGGAATCGACGATTTGTCATGAGATCCGTCAGCACCATCAGCCGGTGATCTTCGGCCATGCCAGCCAGCACCCGCTG TTCTCCACGCACCACACGCCGAAAACCTATGGTCTGGAAAGCTACATTTCGATTCCGATCATCAAGGCCGATGGCGAGTTTTTCGGCACACTCTGCGCCA
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| Amino Acid Sequence |
>TonB-dependent receptor
MSFHTIHRRSNLSPNLLALAIGMASIAPALAEETAATAPANGPLELQATEIGATQMSGTTEDTQSYTTGPMQTATKLSLTMRETPQAVTVITRQRMDDQN MTSVNDVVRGTPGLFLSEASGPGRQTYKARGFDIDNIMYDGLPSSYSPYTLAVQPNLAMFDRVEIVRGATGLVTGAGNPSAAINMVRKRPTADQRVTLTG AAGSWDDYRGEVDASSPLNESGTLRGRVVTSYQGADSFRDKEENDHGLFYAIGEADLSDSTTATLGFSRQNDQTNYFWGGLPIGENGHHLDLPRSTYPGT DWENRKLQVDTVFGEVEHRFANDWKLHLGGSTSTTDGEFSGTYLSRYDGPLETTAYQSHHTDKQRAFDGFASGPFEAFGRTHELVVGASNRVYDATTKEY SPYDTGLPIAAPKPDFVRSGKSRNVTTQDAVYLTTRLSLADPLTLILGSRLDWYDYDDRSADGDFKVTRNLTRYAGLIYKLDDHHSVYASYTDIFTPQTQ KDLGGKVLEPIVGENYEVGIKGEYFDGALNGSVAVFQMDQTNRATQAATQLGCPELTCYETSGKVRAQGVDMELQGALTEQWQVGAGYTYTRAHYIKDEN PANNNQKFDTDMPEHLFKVSTVYRFKGPLEKLRVGGNVYWQSRMYNDIALANGGSYRLEQGGYAVTDLMAGYEVNKHLDLQVNANNIFDRKYYSSIGTDV TWGSTDNYGTPRSYMMTAKYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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