Pseudomonas sp. PTA1, EW80_RS24125

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PTA1 EW80DRAFT_scaffold00012.12, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGACGTCGATCGACCCGCTCAAGGCCTCATAGGCGCGGGTCCAGTAGGCATAACTGGTGATGTAGTTTTTCGACGCGGTGATGCGGTTTTCCACGGCGCG CACGGAATAGAACTGGTTCTGTTCCAGATCTTTCGCATCCAGGGTATTGGCGATGCCAAGCAAGGTGCTGATCGCGGCGATGACACCCGCAACAAACAGT GCGCCAACGGCGATGGCCAGGCGCCGGGTCACGGCGCGTTGCGGGGTGGGGATTGGCTGCGCAGGGAGAATAACGGCCATGTGCTCGTCCTTGATCCGGT GTCTTCTGAATCTAGAACAATGGCGAGCGCACAATGTTCAGATTGTTGTTATTGGTATCGCCTGGATTTTTTCAAAGTGTAGCGAATCTGCCGGAATTTC CAGCAGCGCCGGCCAGCGGCGAATCCCGAAAGGGCGAGACTTCCCGCACAAAAACCGGATAATGGCCGCCATTCGTTTAGCCGTATTCTGGTAATCCCGC
DNA Sequence for Gene
>EW80_RS24125
ATGGAAATCAAGGTCAACTTTCTCGACAACCTTCGACTTGAAGCCAAGTTCGACGACTTCACGGTGATCGCCGATCAGCCAATTCGCTACAAGGGTGATG GTTCGGCACCGGGGCCGTTCGACTACTTCCTGGCGTCGTCGGCCTTGTGCGCGGCTTACTTCGTCAAGCTGTACTGCGACACGCGCAATATTCCGACAGA GAACATTCGCCTGTCGCAGAACAACATCGTCGACCCGGAAAACCGCTACAACCAGATTTTCAAGATTCAGGTCGAATTGCCCGCCGATATTTCGGACAAG GATCGCCAGGGCATCCTGCGTTCCATCGACCGTTGCACCGTGAAGAAAGTGGTGCAGACCGGCCCCGAGTTCATCATCGAAGAAGTCGACAACCTCGACG CCGATGCCCAGGCCTTGTTGATGCCTCAGTCCGATTCCCAGGCAGGCACCTACATCGCCGGCAAGGACCTGCCGCTGGAACAGACCATTGCCAACATGTC GAAGATCCTCGCCGACCTCGGCATGAAGATCGAAATCGCCTCGTGGCGCAACATCGTGCCCAACGTCTGGTCGCTGCACATTCGCGACGCGCATTCGCCG ATGTGCTTCACCAACGGCAAGGGCGCGACCAAGGAAGGCGCACTGGCGTCGGCGCTGGGCGAGTTCATCGAGCGCCTCAATTGCAACTTCTTCTATAACG ACCAGTTCTGGGGCGAAGACATCGCCAATGCCGAATTCGTCCATTACCCGGACGAGAAGTGGTTCAAGCCGGGTCCTAAGGACGAATTGCCAAGCGAGAT TCTCGACGACTACACCCTCGGCATTTACAACCGCGATGGCGAACTGCGTGGCTCGCACCTTTACGACACCAATTCCGGCAACACCCAGCGCGGCATCTGC TCGCTGCCGTTCGTGCGCCAGTCGGACGGTGAGGTGGTGTACTTCCCGTCGAACCTGATCGAAAACCTCTACCTCAGCAACGGCATGAGCGCCGGCAATA CCTTGGCCGAAGCGCAGGTGCAGTGCCTGTCGGAAATTTTCGAGCGCGCGGTGAAACGCGAAATCCTCGAAGGCGAAATGGCCCTGCCGGATGTACCGCA AGAGGTACTGGAAAAATACCCGAGCATCCTCGCCGGCATCAAAGGCCTTGAAGAGCAGGGCTTCCCGGTATTGGTCAAGGACGCCTCGCTGGGCGGTGAA TTCCCGGTGATGTGCGTGACCCTGATGAATCCGCGCACTGGCGGCGTCTTCGCTTCCTTCGGCGCGCACCCGAGCCTGGAAGTCGCGCTGGAACGCAGCC TGACCGAGCTGCTCCAGGGCCGCAGCTTCGAAGGCCTCAATGACTTGCCGCAGCCGACGTTCTCGGGGCAGGCAGTGACCGAACCGAACAACTTTGTCGA GCACTTCATCGATTCCAGCGGTGTGGTGTCGTGGCGCTTCTTCAGTGCCAAGCCAGACTTCGAATTCGTCGAATGGGACTTCTCGGGCCAAGGCGAAAAC TCCAACGCCGAAGAAGCCGCGACCCTGTTCGGCATCCTCGAAGACATGGGCAAGGAAGTCTACATGGCGGTCTACGAGCACATCGGCGCCAAGGCCTGCC GCATCCTCGTGCCGGATTACTCGGAGATCTACCCGATCGAAGACCTGATCTGGGACAACACCAACAAAGCCCTGCAATTCCGCGCCGACATCCTTAACCT GCACAACCTCAGCAAAGTCGGCCTGCGCAACCTCGTTCAGGGGCTGGAGCGCAGCGAGCAGGACGATTACACCGATATCACCACACTGATCGGCATCGAG TTCGATGACAACACGCCGTGGGGCAAGCTGACGATTCTGGAACTGCGCCTGCTGATCTACCTCGCGCTGCAGAAGTTTGACGAGGCCAAGGATCTGGTTG AGGCGTTCCTGCAATACAACGACAACACCGTTGAGCGTGGCTTGTTCTATCAGGCTGTGAATGTGGTGCTGGAGATGGAGCTGGACGAGGATCTCGAGCT GGAAGACTACGAGGCCAACTTCCGTCGGATGTTTGGTGACGAGCGTATGGATGCTGCGATTGGTTCGGTGAATGGCAGTGTGCGTTTTTACGGTTTGACG CCGACGAGCATGAAGCTGGAAGGGCTGGATCGGCATTTGCGCTTGATCGAAAGCTATAAAAAGCTGCATGCGGCGCGGGCGAATGGGACAACCTTGTCGC GCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GAGCAGGCGATCCAAATGTAGGAGCTGCCGGAGGCTCGGGCCGCGATCGGACGATCTTGTGATCTTGCTTTTGCCGTGATAAAGCAAAGTCAAGAGATCG CAGCCTGCGGCAGCTCCTACAGGTCGAGCTAACTTCAGCGGCCATGCGCGGCGTTGGCCAACTGCCCCGTATCTACCCGCACAAACACCGAATCACCCAC TGCCGTCAGCACTTCCCCGGCATACACCTCGCAAATCACCCGGGTCTTGCGCCCGACTTCACCTTCGACTCGCGCGCGCAAGAGCAGCGGTACGCCCATC GGTGTGGGTTTGATGAACTTGATCCCAAGGTTACCGGTGACGCAGTCGATGCGCGGCAGGCTGCCGGCTTCGCGGTTTTCCGCGCGGTAGTGCCAGGCCA TGGCGGTCCAGTTGGAGTGACAGTCGACGAGCATGGCAATCAGCCCGCCGTAAACCAGATCCGGCCAGCCGCAGTATTGAGCTTCGGGCAGATGCTCGGC
Amino Acid Sequence
>protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO
MEIKVNFLDNLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCDTRNIPTENIRLSQNNIVDPENRYNQIFKIQVELPADISDK DRQGILRSIDRCTVKKVVQTGPEFIIEEVDNLDADAQALLMPQSDSQAGTYIAGKDLPLEQTIANMSKILADLGMKIEIASWRNIVPNVWSLHIRDAHSP MCFTNGKGATKEGALASALGEFIERLNCNFFYNDQFWGEDIANAEFVHYPDEKWFKPGPKDELPSEILDDYTLGIYNRDGELRGSHLYDTNSGNTQRGIC SLPFVRQSDGEVVYFPSNLIENLYLSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGEMALPDVPQEVLEKYPSILAGIKGLEEQGFPVLVKDASLGGE FPVMCVTLMNPRTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDLPQPTFSGQAVTEPNNFVEHFIDSSGVVSWRFFSAKPDFEFVEWDFSGQGEN SNAEEAATLFGILEDMGKEVYMAVYEHIGAKACRILVPDYSEIYPIEDLIWDNTNKALQFRADILNLHNLSKVGLRNLVQGLERSEQDDYTDITTLIGIE FDDNTPWGKLTILELRLLIYLALQKFDEAKDLVEAFLQYNDNTVERGLFYQAVNVVLEMELDEDLELEDYEANFRRMFGDERMDAAIGSVNGSVRFYGLT PTSMKLEGLDRHLRLIESYKKLHAARANGTTLSR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site