Pseudomonas sp. PTA1, EW80_RS08110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGGCAGGCGTTGCTGGCGTTCGATTGGCCGGGCAATGTGCGGCAGTTGCGCAATGTCCTGCGTACGCTGGCGGCGTTGTGTGATGGCGGGCGGGTCGG GGTTGAGGATTTGCCGGTGATGATTCGGCAGGCGCGGCCGGCGGTGGTGGCGCAGCCATTGGAAGATGCCGAACGACTGGCCTTGCTCAGTGCGCTGGAG CAGACGCGCTGGCATATGACCCGTACCGCTGAACAGTTGGGCGTCAGCCGCAATACGCTGTACAGAAAGCTTCGCAAGCACGGTATTGCCCGCTCTGCCT GACCGACCTGATCGTTCCCACGCTCCGCGTGGTAACGCCTCCCCGGACGCTCCGCGTCCGCTCTGGGACGCAGAGCGTCCCGAGCTGCATTCCCACGCAG AGCGTGGGAACGATCAGGTCGAACAGGCCCGCCCCTCAGCTAAAGAGTGCCATTTCCCCGTCCCTACGCTAACCTGCGGCCATGTTTTACGAGGTCGACT
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| DNA Sequence for Gene |
>EW80_RS08110
ATGCACATTCATATTCTGGGTATCTGCGGGACTTTCATGGGCTCGATGGCAGTGTTGGCCAAAGAGCTGGGTCATCACGTCACCGGCTCCGACGCCAACG TCTATCCGCCGATGAGCACGCAGCTCGAGGCCCAGGGCATTCAGCTGACGCAGGGTTATGACCCGGCGCAGCTCGATCCGGCGCCGGATCTGGTGGTGAT CGGTAATGCCATGTCCCGTGGCAACCCGGCGGTGGAATATGTGCTGAACAAAGGCCTGCCGTACGTCTCCGGCCCGCAGTGGCTGGCTGACCACGTGCTG CAAGGTCGCTGGGTATTGGCCGTGGCCGGTACGCATGGCAAGACCACCACCAGCAGCATGCTCGCCTGGGTGCTGGAACACGCCGGGATGAGCCCGGGTT TCCTCATCGGCGGCGTGCCGCAGAATTTCTCGGTGTCGGCGCGCCTGGGCGGTACGCCGTTCTTTGTGATCGAGGCTGATGAATACGACAGCGCCTTCTT CGACAAGCGCTCGAAATTCGTCCACTACCGTCCGCGCACTGCGATCCTCAACAACCTTGAGTTCGATCACGCCGACATCTTCCCCGATCTGCCAGCAATC GAGCGTCAGTTTCATCACTTGGTGCGCACCATTCCGAGCGAAGGGCTGGTCATCCACCCGACCACCGAGCCGGCCTTGCAGCGCGTGATTGAAATGGGTT GCTGGACCCCGGTGCAAACCACCGGTGCCGGCGGTCAGTGGCAGGTCAAGTTGCTCAGCGAGGACGGCTCGGCGTTCGAAGTGATGTTCGAAGGCGCGTC CCAGGGCACCGTCGAGTGGGAATTGACCGGTCAACACAACGTCGCCAATGCCTTGGCCGCGCTGGCTGCGGCGCGTCACGTTGGTGTGGTGCCATCGATG GGCATCGCCGGTTTGAGCGCGTTCAAGAACGTCAAACGACGCATGGAGAAAGTCGCCGAGGTGCGCGGCATCACCATTTACGACGACTTCGCTCACCACC CGACCGCTATCGCCACCACGCTTGATGGCCTGCGCAAACGCATCGGCGACGCGCCACTGATTGCGATCATCGAGCCGCGCTCCAATTCGATGAAGCTCGG CGCCCATCGTGACGGTCTGCCGGACAGCGTGGTCGATGCCGATCAGGTGATCTGGTACGCCCCGGCCAACCTCGGTTGGGACCTCGGCGCCACTGCAGCG TTATGCACCGTGCCGTCAATCGTCAGCGATTCGCTGGAAGGCATCATCGAGCGCGTGAAGAGCCAGGCGCAGCCCGGCACGCACGTAGTGATCATGAGCA ACGGCGGCTTCGGCGGCCTGCACGGCAAGCTCGCCGAGGCACTGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACTTTTTCCCAGGCCGGCGGCCCGGAACGCATCACCCTGGCGATGACCGGCGCCTCGGGCGCGCAGTACGGTTTGCGCCTGCTCGATTGCCTGGTACG CGAAGATCGCGAAGTGCACTTCCTGATCTCCAAGGCCGCGCAACTGGTGATGGCCACCGAGACCGACGTGTCCCTGCCGAACAAGCCGCAGATGATGCAG GCCTTTCTGACCGAATACACCGGCGCCGCTGCCGGGCAGATTCGCGTGTATGGCAAGGAAGACTGGATGTCGCCGGTAGCTTCGGGCTCCGGCTCGCCGG CAGCCATGGTGGTGGTGCCGTGTTCGACCGGCACGCTGTCGGCGATTGCCACCGGCGCCTGCAACAACCTGATCGAACGCGCGGCGGACGTTACGCTGAA AGAGCGCCGCCAGTTGATTCTGGTGCCGCGCGAGGCGCCGTACTCGAGCATTCATCTGGAGCACATGCTCAAGCTGTCGAATCTGGGCGTGACGATACTG
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIQLTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGGTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGAGGQWQVKLLSEDGSAFEVMFEGASQGTVEWELTGQHNVANALAALAAARHVGVVPSM GIAGLSAFKNVKRRMEKVAEVRGITIYDDFAHHPTAIATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPDSVVDADQVIWYAPANLGWDLGATAA LCTVPSIVSDSLEGIIERVKSQAQPGTHVVIMSNGGFGGLHGKLAEALQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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