Pseudomonas sp. PTA1, EW80_RS07060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTCGTTCCGTCGCGACCCGACGCTGGCTGCCAGCCATGCGGCAAAAGTGCGCTCGGCGGGCAAGCTCGGTTACTACTGGCAGCTGTTCGCCGGCCTCG GCTGGACCAGCATCCACTGGCTGCACAAGATCCATCAGCCGACGCTGGTGCTGGCCGGCGATGACGACCCACTGATTCCGCTGATCAACATGCGCATGCT CGCCTGGCGCATTCCCAATGCGCAGTTGCACATCATCGATGACGGCCATCTGTTCCTGATCACTCGCGCCGAAGCGGTGGCGCCGATCATCATGAAGTTT CTCGAAGAGGAGCGTCTGCGCGCAGTCATGCACCCGCATCCGACCCCGCTCGGCGGCTGATCGCGGCGGCCTGCTTTATGCAGCACTTTCCAAATCAAGC GCGCGGCAGGACGCCGCGCAGGCAGCAACCGGTTACAGCGTCTATGGTGTTCTGGTTCGGTGAGTGTGTTTTTGCCCTGAAGACGAAGGAGTGTTGAGTC
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| DNA Sequence for Gene |
>EW80_RS07060
ATGCGCGAAAAACCAGCGACGGGCGTGGTGCCCAGCCCCGCCGTGTTTATCAACGCCCAAAGTGCGATCGCCGGTCTGCGTGGCAGGGATCTGCTGTCGA CACTGCGCAGCGTCGCCGCCCACGGCTTGCGCAATCCGTTGCACAGCGCAAAGCATGCGCTGAAGCTTGGCGGGCAGTTGGGCCGCGTGCTGCTCGGCGA AACCCTGCACCCGACCAACCCGCAAGACAGCCGCTTCGCCGATCCGGCGTGGAGCCTCAACCCGTTCTACCGGCGCAGCCTGCAGGCGTATCTGGCCTGG CAAAAACAGGTCAAAAGCTGGATCGATGAAGGCGACATGAGCCCTGAAGATCGTGCCCGTGCGCACTTCGCTTTCACCCTGCTCAATGACGCCGTAGCGC CCTCCAACACGCTGCTCAATCCGCTGGCGGTCAAGGAGCTGTTCAATTCCGGCGGGCAGAGTCTGGTGCGTGGCCTGAGCCATCTGTTCGATGATCTTTT GCATAACGACGGCCTGCCACGGCAAGTGACCAAGCAGGCGTTCGAGGTCGGCAAAACCGTGGCGACCACCAGCGGATCGGTGGTGTTTCGCAATGAAATG TTCGAGTTGATCCAGTACAAATCGATGAGCGAAAAGCAGTACGCCAAGCCGCTGCTGGTGGTGCCGCCGCAAATCAACAAGTACTACATTTTCGATCTGA GCCCGCAGAACAGCTTCGTCCAGTACGCCCTGAAAAACAGCCTGCAGACCTTCATGATCAGTTGGCGCAATCCTGATGTGCGCCATCGCGAGTGGGGCCT GTCGAGTTACGTCGAAGCAGTCGAAGAAGCGATGAACATCTGCCGGGCGATTACCGGCGCCCGCGAAGTGAACCTGATGGGCGCCTGCGCCGGCGGCCTG ACCATTGCCGCCCTGCAAGGGCATTTGCAGGCCAAACGGCAACTGCGCCGGGTCGCCAGCGCGACGTACCTGGTCAGTCTGCTCGACAGCCAGATCGAGA CCCCGGCCACGCTGTTCGCCGATGAACAAACTCTGGAAGCGGCCAAGCGTCGCTCGTATCAGAAAGGCGTGCTCGATGGTCGCGACATGGCCAAGGTCTT CGCCTGGATGCGCCCCAACGATTTGATCTGGAGTTACTTCGTCAACAACTACCTGCTGGGCAAGGAGCCGCCAGCCTTCGACATCCTCTACTGGAACAAC GACAACACGCGCCTGCCGGCGGCGCTGCACGGCGATCTGCTGGACTTCTTCAAGCACAACCCGCTGATCCACGCGGGCGGTCTCGAGGTGTGCGGTACGC CGATCGATCTGCAGAAGGTCAATGTCGACAGCTTCAGCGTCGCCGGCATGAACGACCACATCACGCCGTGGGACGCGGTGTATCGCTCGACCCTGCTGCT CGGTGGCGAACGACGTTTCGTGCTGTCCAACAGCGGTCACGTGCAGAGCATCCTCAACCCACCGAGCAACCCGAAAGCTGCCTACGTCGAGAACGCCAAA CTGAGCAGCGACCCGCGTGCCTGGTACTACGATGCCAAACACGTCGACGGCAGCTGGTGGCCGCAGTGGCTGGAATGGGTCGCCCAGCGCTCCGGCGCCC TGAATGAAACTCGCACCACCCTCGGCAATCCGAACTATCCACCGATGGAAGCGGCACCTGGCACCTATGTGCATGTGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCTCAACCGATTTTTTCTAAGAAGACTGGATGAAAACCCGCGACCGGATTCTCGAATGTGCGCTGCAACTGTTCAACGAAAAGGGTGAGCCGAACGTTT CCACCATGGAGGTGGCCAACGAAATGGGGATCAGCCCCGGCAATCTCTACTACCACTTCCACGGCAAGGAACCGCTGATTCTCGGTCTGTTCGAACGCTT CCAGCACGAACTCGCACCCCTGCTCGACCCGCCGCCGGACGTTGAACTGGCGCCGGAGGATTACTGGCTGTTTCTGCATTTGATCGTCGAACGACTGGCG CAGTATCGGTTCCTGTTCCAGGACCTGTCGAACCTCGCCGGGCGCTTGCCGAAACTGGCCAAGGGGATTCGCAATCTGCTCAATGCGCTGAAGCGGACGC TGGCGTCGTTGCTGGCGCGATTGAAGGCTTCGGGGCAACTGGTCAGCGATACCCAGGCATTGGGGCAACTGGTGGAGCAGGTGACCATGACGTTGCTGTT
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MREKPATGVVPSPAVFINAQSAIAGLRGRDLLSTLRSVAAHGLRNPLHSAKHALKLGGQLGRVLLGETLHPTNPQDSRFADPAWSLNPFYRRSLQAYLAW QKQVKSWIDEGDMSPEDRARAHFAFTLLNDAVAPSNTLLNPLAVKELFNSGGQSLVRGLSHLFDDLLHNDGLPRQVTKQAFEVGKTVATTSGSVVFRNEM FELIQYKSMSEKQYAKPLLVVPPQINKYYIFDLSPQNSFVQYALKNSLQTFMISWRNPDVRHREWGLSSYVEAVEEAMNICRAITGAREVNLMGACAGGL TIAALQGHLQAKRQLRRVASATYLVSLLDSQIETPATLFADEQTLEAAKRRSYQKGVLDGRDMAKVFAWMRPNDLIWSYFVNNYLLGKEPPAFDILYWNN DNTRLPAALHGDLLDFFKHNPLIHAGGLEVCGTPIDLQKVNVDSFSVAGMNDHITPWDAVYRSTLLLGGERRFVLSNSGHVQSILNPPSNPKAAYVENAK LSSDPRAWYYDAKHVDGSWWPQWLEWVAQRSGALNETRTTLGNPNYPPMEAAPGTYVHVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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