Pseudomonas sp. PTA1, EW80_RS02195
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCAGATTGCGCCGCCGCGCACGCTCTACGAAGAGCCGAAAAACACCTTTGTCGCCAACTTCATTGGCGAGAACAACCGCCTCAACGGTCGCCTGCTCAG CCAGAGCGGCGAGCGCTGCGTGGTCGAGTTGGGGCGTGGAGAGAAGGTCGAGGCGCTGGCCGTCAACGTTGGCCAGACCGGCGAACCGGTGACCCTGTCG ATCCGTCCGGAGCGCGTCAGCCTCAACGGTTCGAGCGATCAATGCGTCAACCGCTTCTCAGGGAGGGTGGCGGAATTCATCTATCTGGGCGACCACGTCC GGGTGCGCCTGGAAGTCTGCGGCAAGACCGACTTCTTCGTGAAACAACCGATTGCCGAGCTCGATCCTGCGCTCAGCGTCGGCGACGTGGTACCGCTTGG CTGGCAGGTCGAGCACGTTCGTGCCCTCGATCCGCTTTTAGAGGCGCACTAAGCGCCCCGGCAATACCAACACCAACCCTGCACGTGGAGAGAACAATAA
|
|
| DNA Sequence for Gene |
>EW80_RS02195
ATGTTGAGATCCCTGAAGTTCACCGCCCTGACTCTGGGCCTGATGGGTGCGACCGGCGCAATGGCCGCCGGCCCGGACTTGACCGTGGTGTCGTTTGGCG GGGCGAACAAGGCGGCGCAAGTCAAAGCCTTCTATGCACCGTGGGAAGCGGCGGGCAACGGCAAGATCGTCGCTGGCGAATACAACGGCGAAATGGCCAA GGTCAAAGCCATGGTCGACACCAAGAGCGTGTCGTGGGATCTGGTCGAAGTTGAATCGCCAGAGCTGTCCCGGGGTTGCGACGAAGACATGTTCGAGCAA CTCGACCCGGCACTGTTCGGCAAGACCGAAGACTACGTCAAGGGCGCCATTCAGCCGTGCGGCGTAGGTTTCTTTGTGTGGTCTACCGTGCTGGCCTACA ACGCCGACAAGCTGAAGACCGCGCCGACCAGTTGGGCGGATTTCTGGGACACCAAGAAATTCCCGGGCAAGCGCGGCCTGCGCAAAGGCGCCAAGTACAC CCTCGAATTCGCGCTGATGGCCGATGGTGTGGCGCCCAAAGACGTCTACAAAGAGTTGGCGAGCAAGGGCGGCCAGGATCGCGCCTTCAAGAAACTCGAT GAGCTCAAGCCAAGTATTCAGTGGTGGGAAGCCGGTGCACAACCGCCGCAATACCTTGCTTCCGGTGACGTTGTCATGAGCTCGGCCTACAACGGTCGCA TCGCTGCCGTGCAAAAAGAATCCAACCTGAAAGTGGTATGGAACGGCGGCATCTACGACTTCGACGCCTGGGCCATCCCGAAAGGTCTGGACGCCAAGCG CGCCGAAGCGGCGAAGAAATTCATCGCCTTCTCGGTGCAGCCGCAGCAGCAGAAGACCTACTCGGAAAACATCGCCTACGGCCCGGCCAACACCCAAGCC GTGCCGCTGCTGGCCAAGGATGTCCTGAAAGACATGCCGACCACCCCGGAGAACATCGCCAACCAAGTGCAGATCGACGTCAGCTTCTGGGCTGACAACG GCGAGCAACTGGAACAGCGTTTCAATTCCTGGGCGGCGAAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCACTTATTTACCTGTATGGAGATGGCAAGGGGGCTTTTGTGGTGAGGGGATTTATCCCCGTCGGGTTGCGAAGCAGCCCCAAAGCCATACCCGCTCGGT GGGTCAGATAAACCGCATTCTCAGGTTTTACGACTGCTGCGCAGCCGAACGGGGATAAATCCCCTCGCCACCAGGCTCGCTCCCACAGGTAGCAGTGTTT CAACGCAACAGAGGTGGTTCGCCACCTCTGTAACGATCAAAGATTTGCGGAGTACGTCATGGCCATCGCCGTTCCCCTGAACGAGGGCGCCAGCCCCACT TTGAAGCAGAAGCTCAAGCACGCCGAGCGGGTCAACCGCTGGAAGGCCCAGGCACTGATTGCGCCGCTGGTGCTGTTTCTGCTGCTGGTGTTTCTGGTGC CGATCGTGGCGCTGCTCTATAAAAGCGTCGGCAACCCGGAAGTGGTTGGCGGCATGCCGCGCACTGTCACTGCCATCGCGAGTTGGGACGGCCGTGGTCT
|
|
| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MLRSLKFTALTLGLMGATGAMAAGPDLTVVSFGGANKAAQVKAFYAPWEAAGNGKIVAGEYNGEMAKVKAMVDTKSVSWDLVEVESPELSRGCDEDMFEQ LDPALFGKTEDYVKGAIQPCGVGFFVWSTVLAYNADKLKTAPTSWADFWDTKKFPGKRGLRKGAKYTLEFALMADGVAPKDVYKELASKGGQDRAFKKLD ELKPSIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGIYDFDAWAIPKGLDAKRAEAAKKFIAFSVQPQQQKTYSENIAYGPANTQA VPLLAKDVLKDMPTTPENIANQVQIDVSFWADNGEQLEQRFNSWAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|