Pseudomonas sp. PTA1, EW80_RS23965

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PTA1 EW80DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGTCGCCGATGTGCTGGTTCGGCGGTTACGAAGGCGCGCCGACCAAGGCCTTCGTCGGCAACTACTACCTGAGCGGCGACACCGTGGAGTGGAATCCGGA CGGCAGCATCAGCTTCGTCGGCCGCAGTGATGATGTGATCACCACTTCGGGCTACCGCGTCGGCCCGTTCGACGTGGAAAGTGCCCTGATCGAACACCCG GCCGTGGTCGAGGCGGCGGTCGTCGGCAAACCCGATCCGGAACGCACCGAACTGGTCAAAGCCTTTGTTGTGCTGAGCGCGCAGTACCGCGCCGCGCCGG AGTTGGCCGAAGAACTGCGCCAACACGTACGCAAGCGTCTGGCCGCGCATTCGTACCCGCGTGAAATCGAATTTGTCAGCGAGTTGCCCAAAACCCCGAG TGGCAAATTGCAGCGCTTTATCTTGCGCAACCAGGAAATCGCCAAGGCTCAAGAGGCCGCGGCGCACAGAGTTTCAGCTTGAATCCAAGGAAACACCGTC
DNA Sequence for Gene
>EW80_RS23965
ATGCAGATCGAGAACAAAGTTTTTATTGTCACCGGCGGCGCGTCAGGCCTCGGTGCCGCCAGCGCTGAATTGCTGGTCAGTGCCGGCGCCAAAGTCATGC TGGTCGACATGAACGCCGAAGCCGTCGCCGCTCAGGCGCAGCGCCTGGGTGCGCAAAGCGTGGTTGCCGACATCAGCAATGAAGCCGCCGCCGAAGCCGC TGTGCAGGCGACCGTTGCCGCATTTGGCAGCCTCAACGGCCTGATCAACTGCGCCGGCATCGTTCGCGGCGAGAAAATTCTCGGCAAGAACGGCCCGCAC GCCCTGAGCAGTTTTGCTCAAGTGATCAACGTCAACCTGATCGGCAGTTTCAACATGCTGCGCCTGGCTGCGGCGGCGATCGCCGAGAGCGAAGCCAATG CTGACGGCGAGCGTGGAGTGATCATCAACACCGCCTCGGTCGCAGCGTTCGACGGCCAGATTGGCCAGGCTGCGTACTCGGCTTCGAAAGGCGCGATCGC CAGCCTGACCCTGCCGGCCGCCCGCGAGCTGGCGCGCTTCGGCATCCGCGTGATGACCATCGCACCGGGCATTTTCGAAACGCCGATGATGGCCGGCATG ACCCCGGAAGTGCGCGACTCGCTGGCCGCCGGCGTGCCATTCCCGCCGCGTCTGGGCAAGCCTGCCGAATACGCCGCGCTCGTGCGCCACATCATCGAAA ACAGCATGCTCAACGGCGAGGTGATCCGTCTCGACGGCGCCTTGCGCATGGCCGCCAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGAGGATTAGTCATGACTATGTCCAATGATCCGATTGTTATCGTCAGCGCTGTCCGCACACCGATGGGCGGTTTTCAGGGCGAGTTGAAAAGCCTCACCG CACCGCAACTCGGCGCGGCGGCGATCAAGGCTGCGGTCGAACGCGCCGGTGTCGCCAGCGACGCGGTTGATGAACTGCTGTTTGGGTGCGTACTGCCCGC CGGCCTCGGTCAGGCGCCGGCACGTCAGGCTGCGCTGGGCGCCGGGCTGGATAAATCGACGCGCTGCACCACGGTGAACAAGATGTGCGGCTCGGGCATG CAGACCACCATCATGGCTCACGACATGCTGCTTGCCGGAAGTGCCGACGTGGTGATCGCCGGCGGCATGGAAAGCATGTCCAACTCGCCGTACCTGCTCG ATCGTGCCCGCGCCGGCTATCGCATGGGCCATGGCCGCGTGCTCGATTCGATGTTCCTCGACGGCCTCGAAGATGCCTACGACAAGGGCCGCCTGATGGG
Amino Acid Sequence
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MQIENKVFIVTGGASGLGAASAELLVSAGAKVMLVDMNAEAVAAQAQRLGAQSVVADISNEAAAEAAVQATVAAFGSLNGLINCAGIVRGEKILGKNGPH ALSSFAQVINVNLIGSFNMLRLAAAAIAESEANADGERGVIINTASVAAFDGQIGQAAYSASKGAIASLTLPAARELARFGIRVMTIAPGIFETPMMAGM TPEVRDSLAAGVPFPPRLGKPAEYAALVRHIIENSMLNGEVIRLDGALRMAAK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site