Pseudomonas sp. PTA1, EW80_RS23275

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PTA1 EW80DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGACAACCAGGTCAATCCGAAAACCGGCACCATCCGTGGTCGCGCAGTCTTCGACAACGCTGACGGCACCTATACCCCGGGCCTGTACGCACGGCTGAA ACTGGTCGGCAGCGGCACCTACAACGCCATGCTGATCAATGACGAAGCCGTGGGCACTGACCTGGGCAAGAAGTTTGTGCTGGTGATGGATGGCGACAAC AAGACCGCCTACCGCGCCGTCGAACTCGGTCCGAAAATCGAAGGCCTGCGCATCGTCCGCAACGGTCTGAACAAGGACGACACCATCATCGTCAAGGGCT TGCAACGAGTTCGTCCTGGCTCACCGGTCACCCCTGAGGTGATTCCGATGGCCAGCGAGCAGACCCTCGCCGCCCTCGCTCAACAACGTCAAGCGCTGGA AGCCAGCAACCTGCCCAAAGTTGCCCCTGCCAAGGGTGCATCGGGTTCGGCTGCGAAGCTGGCTGCTACGACCCCACGCGGTTAAGGGACGACAACTCCG
DNA Sequence for Gene
>EW80_RS23275
ATGAATTTTTCCCAATTCTTCATTTCCCGGCCGATCTTCGCAGCGGTGCTGTCGCTGTTGATCCTGATCGCCGGCGCGATCTCGCTGTTCCAGTTGCCGA TCAGCGAATACCCGGAAGTCGTGCCGCCGACCGTGGTCGTGCGCGCCAACTTCCCGGGCGCCAACCCCAAAGTCATCGGTGAAACCGTGGCCGCTCCGCT GGAGCAGGCCATCACCGGCGTCGAGAACATGCTGTACATGTCCTCGCAGTCGACCGCCGACGGCAAGATCACCCTGACCATCACCTTCGCCCTGGGCACT GACCTGGACAACGCGCAGGTGCAGGTGCAGAACCGGGTAACCCGAACCGAGCCGAAGCTTCCCGAGGAAGTAACGCGCATCGGTATCACCGTCGACAAGG CATCGCCCGACCTGACCATGGTTGTGCACTTGACCTCACCGGACAAGCGCTACGACATGCTGTACCTGTCCAACTACGCGATCCTCAACATCAAGGATGA GCTTGCTCGCCTCGGTGGTGTCGGTGACGTGCAGTTGTTCGGTATGGGCGACTACTCGCTGCGCGTCTGGCTTGACCCGAACAAGACCGCTTCACGCAAT CTGACCGCCACCGATGTGGTGACCGCGATTCGCGAGCAGAACCGTCAGGTCGCCGCCGGTCAACTGGGCGCGCCCCCTGCCCCGACCGCGCAAAGCTTCC AGCTGTCGGTCAACACTCAAGGCCGTCTGGTTTCCGAAGAAGAGTTCGAGAATATCGTCATTCGCGCTGGCGACGACGGTGAGATCACTCGCCTGAAGGA CATCGCGCGCATTGAACTGGGTTCCAGCCAATACGCCTTGCGCTCGCTGCTGAACAATCAGCCGGCTGTAGCGATTCCGATCTTCCAGCGTCCCGGTTCC AACGCCATCGACATTTCCAACGAAGTGCGCGGCAAGATGGAAGAGCTGAAGAAAGGCTTTCCGCAGGGCATGGACTACAGCATCGTGTATGACCCGACGA TCTTCGTCCGTGGCTCGATCGAAGCGGTGGTTCACACCCTGTTCGAAGCGCTGATCCTCGTGGTGCTGGTGGTGATTCTGTTCCTGCAGACCTGGCGCGC CTCGATCATCCCGTTGGTGGCAGTGCCGGTATCGTTGATCGGTACGTTTGCGGTCATGCACCTGTTCGGTTTCTCGCTCAACGCCTTGTCGCTGTTTGGC CTGGTACTGGCCATCGGTATCGTGGTGGATGACGCCATCGTCGTGGTGGAAAACGTCGAACGGAACATCGAACTCGGCCTGACGCCGGTCGAAGCGACCA AGCGCGCCATGCGGGAAGTGACCGGGCCGATCGTGGCCACGGCACTGGTGCTGTGTGCGGTGTTCATTCCAGCGGCGTTCATTTCCGGCCTCACCGGGCA GTTCTACAAACAGTTCGCACTGACCATCGCGATCTCGACAGTGATCTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCGCTGGCTGCCGTGTTGCTGAAA AGCCACGATGCGCCGAAAGACCGCTTCTCGAAAGTGCTCGACAAGATCTTCGGCGGCTGGCTGTTCCGTCCGTTCAACCGTTTCTTCGACCGTGCCAGTC ATGGCTACGTCGGCACCGTGCGCCGGGTTATCCGTAGCAGCGGCATCGCCCTGCTTGTGTATGCAGGCCTGATGGTACTGACCTTCTTCGGTTTCTCCAG CACGCCGACCGGTTTCGTACCCGGCCAGGACAAGCAATACCTGGTGGCCTTCGCGCAATTGCCGGATGCCGCGAGCCTGGATCGCACCGAAGACGTGATC AAGCGCATGTCCGACCTCGCGCTGAAACAGCCGGGCGTGGAAAGCGCCGTAGCGTTCCCGGGCCTGTCGATCAACGGTTTCACCAACAGCCCGAACGCCG GCATCGTCTTCGTGACGCTGAAACCGTTCGACGAGCGTAAAGACCCGAGCATGTCCGCCGGCGCGATTGCCGGCGCCTTGAACGGCCAGTACGCGAACAT TCAGGAAGCGTACATGGCGATCTTCCCGCCACCGCCGGTACAAGGTCTGGGCACCATTGGTGGTTTCCGCCTGCAAATCGAAGACCGGGGCAACCTGGGC TACGACGAGCTGTACAAAGAAACCATGAACATCATCAACAAAAGCCACAACGTGCCGGAACTGGCCGGCCTGTTCACCAGCTATACGGTGAACGTGCCGC AGGTCGATGCCGCCATCGACCGCGAAAAAGCCAAGACCCACGGCGTGGCCGTCAGCGACATCTTCGACACCCTGCAGATCTACCTGGGTTCGCTGTATGC CAACGACTTCAACCGCTTCGGGCGCACCTATCAGGTCAACGTTCAGGCCGAACAACAGTTCCGCCTTGAATCCGATCAGATCGGCCAGCTGAAAGTACGC AACAACAAAGGCGAAATGATCCCGCTGGCGACCTTTATCAAGGTCAGCGACACCTCCGGGCCGGACCGCGTGATGCACTACAACGGCTTCATCACCGCTG AAATCAACGGTGCCGCAGCTCCGGGCTATAGCTCTGGCCAGGCGGAAAAAGCCATCGAGAAACTGCTCAAGGAAGAACTTCCGAACGGCATGACCTATGA GTGGACCGACCTGACCTACCAGCAGATTCTGTCCGGCAACACCGCGCTGTTCGTGTTCCCGCTCTGCGTACTGCTGGCGTTCCTGGTGCTCGCCGCCCAA TACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTACCGATGACCCTGCTGTCGGCCATCACCGGTGTGATCATTTCCGGCGGTGACAACAACA TCTTCACCCAGATCGGCTTGATCGTACTGGTGGGACTTGCCTGTAAAAACGCGATTCTGATCGTCGAGTTCGCCAAGGATAAACAGGAAGAAGGCCTCGA TCCGCTCGCTGCGGTGCTGGAAGCCTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCCTTCGCGTTCATCATGGGTGTGGTGCCACTGGTGTTCTCC AGCGGCGCCGGTGCCGAAATGCGTCACGCCATGGGTGTCGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGTCTGCTGCTGACGCCAGTGTTCT ATGTACTGATCCGTAACTTTGTCGAACGCGGCGAGCAGCGCAAAGCAGCCAAGGCGCACACTCTTCAAAAGCCACTGGAGGCGCAACAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCTGAAAGTCTTCCTGCCGAGTCTGCTGGTGCTGGCCCTCAGCGCCTGCGCCGTCGGCCCCGACTACAAGACCCCAGCTACGGAGGCGGCCAACATCAC GACCGCCACCGACGGCGCCGCCGGGCAAAAGAACTTCGACCGTTCGAAATTCGAAGGCATCTGGTGGCAGCAATTCGATGATCCGACTCTGAACCAGTTG GTGAGCCAGTCGCTGCAAGGCAACCGTGAACTGCGCGTGGCGTTCGCCCGCTGGAAAGCCGCCCGGGCGATCCGCGACGACGCCAGCAATGATGCGATGC CGACCATCACCAGCCGCGCCAGCAGCGACTTGGGCAAGGGCCAGATTCCCGGCCAGACCACCGACCGGGTCAATAGCGAGCGTTATGACCTCGGTCTGGA CATGGCCTGGGAGCTCGACCTGTTCGGCCGCATCCAGCGCAATCTGGAAGCCAGTGACGCCGACCAGCAGGCCGCCGAAGCCGATCTTTACCAGTTGCAA
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MNFSQFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRTEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGQLGAPPAPTAQSFQLSVNTQGRLVSEEEFENIVIRAGDDGEITRLKDIARIELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIDISNEVRGKMEELKKGFPQGMDYSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLTPVEATKRAMREVTGPIVATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK SHDAPKDRFSKVLDKIFGGWLFRPFNRFFDRASHGYVGTVRRVIRSSGIALLVYAGLMVLTFFGFSSTPTGFVPGQDKQYLVAFAQLPDAASLDRTEDVI KRMSDLALKQPGVESAVAFPGLSINGFTNSPNAGIVFVTLKPFDERKDPSMSAGAIAGALNGQYANIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YDELYKETMNIINKSHNVPELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLESDQIGQLKVR NNKGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEKAIEKLLKEELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIISGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQEEGLDPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVERGEQRKAAKAHTLQKPLEAQQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site