Pseudomonas sp. PTA1, EW80_RS01810
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGATCCGCATCACCCGCATGCGCGCATAACCTGCCTATTACAAGGAGTCCTACATGACCAAAACCGTCATCACCAGCGACAAGGCCCCGGCCGCCATCG GTACTTACTCCCAGGCGATCAAGGCAGGCAACACCGTTTACATGTCGGGCCAGATTCCTCTGGACCCAAAAACCATGGAACTGGTTGAGGGCTTCGAAGC CCAGACCGTCCAGGTCTTCGAGAACCTCAAAGCCGTGGCCGAAGCGGCCGGCGGTTCGTTCAAGGACATCGTCAAACTGAACATCTTCCTCACCGACCTG AGCCACTTCGCCAAGGTCAACGAGATCATGGGCAAGTACTTCGACCAGCCATACCCGGCCCGCGCCGCCATTGGCGTGGCCGCCCTGCCGAAGGGTGCGC AGGTTGAAATGGATGCCATTCTGGTCATCGAGTGATGCGCACGGCGCGGCCTTCACGCCGCGCCGACTGCTGCAAGAAAAGGTTTTGAAAGGATTTCACC
|
|
| DNA Sequence for Gene |
>EW80_RS01810
ATGCGCAAAGCGCTAGCTCTCTCGCTGCTCGCCCTGTTTCTCGGCGGCTGCGCCAGCGACCCTGCCGACCGTGACATCAGCGGCACCTGGATCAACCAGG TGGCGATCGATGCCGCCGCCAAGGGCGGTCCCCTGCGTGAAGCGCTGCAGGCTTACGGTCCGAATCTGGAGTGGGACGTCAACACCAAGGCCGGTCAGGC CCGCTATACCAACGGTTTTGAGAACGTCGAAGGACGGCTGCTGGGCGAAGAGTCCGGCGCCTGGAAAGTCGACTTTTATGGCAGCTCCGCCAGCGAACTG AAACGCGATGGCGGGCGCCTGCAACAAGCCGCCAGCGACAACGAACCCGAACAAGTCTTCGATCGCGCACAGATCCCCGTGCCGGAAGGCGCGCCAATCG GTGCCAGCTTCGAACGCGCGCTCTACTCAGCATACCTGGGCGGCAACTGGACCATCGCCAGCGGCCAGGGTGAAGGCGGCACCGTGCAGTTCCAGGCCGA CGGCCAGGTGACCGGCCTGCCGGGCGTTGACCGTTATGCCTTGTGTCTGGCCGGCGATTGCGCGTCGATGAGCAATGGCAACGACAGCATGTGGCTGCAA CTCAATGGCCAGGGCAATAACTGGATCTTTGTGCGCAAGGGCAAGGAACTGGAGATTTTGCAGGCAGTGAACGCTGCGCTGGCGGATGAGCAACCGCAGT TTGCCGCGGGTGAGCGCAAGTGGTTGCTGGAAAAGCAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCGCTTCCGAAACCTCAGAAGATCAAATGTGGGAGCGAGCCTGCTCGCGAACGCGGTGGGTCAGTCGAACTGATAATGACTGACATACCGCATTCGCGA GCAGGCTCGCTCCCACAGTGGTTTTTGTGTTGCTGAAAATTCAGCAATTACCTTCAAGAATCGCTGCGTAGCCTTCACGATAGCTGGGATACTTCGGCAC CCAGCCCAACGCTTTCGCCCGCGCATTGCTGCAACGCTTGCTGCCGGTGCGCCGCACACTGGCGTCGTCCGCCCATTCAGTCACACCCAGGTACTCGCGC AACCAGCCCACCACTTCGGCCAAAGGCGCAGGCGCGTCATCCACACCGATATAGAGCTCGTCCAGCTTGACGCCCTCGCGGTCTTTTTCCAGCAAGAACG CCAGCAGCCCCGCTGCATCATCGGCATGAATACGATTGCCATACAGCGGTGGCTCTGTAGCCACGCGATAGCCGCGACGCACCTGAGTCAGCAGCCACTC
|
|
| Amino Acid Sequence |
>hypothetical protein
MRKALALSLLALFLGGCASDPADRDISGTWINQVAIDAAAKGGPLREALQAYGPNLEWDVNTKAGQARYTNGFENVEGRLLGEESGAWKVDFYGSSASEL KRDGGRLQQAASDNEPEQVFDRAQIPVPEGAPIGASFERALYSAYLGGNWTIASGQGEGGTVQFQADGQVTGLPGVDRYALCLAGDCASMSNGNDSMWLQ LNGQGNNWIFVRKGKELEILQAVNAALADEQPQFAAGERKWLLEKQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|