Pseudomonas sp. PTA1, EW80_RS01685
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF12790 | Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 | IPR017734 | Type VI secretion system, lipoprotein SciN | 34 | 151 | 2.8E-39 |
| Gene3D | G3DSA:2.60.40.4150 | Type VI secretion system, lipoprotein SciN | IPR038706 | Type VI secretion protein SciN-like superfamily | 29 | 161 | 5.9E-37 |
| NCBIfam | TIGR03352 | JCVI: type VI secretion system lipoprotein TssJ | IPR017734 | Type VI secretion system, lipoprotein SciN | 10 | 154 | 7.8E-48 |
| PANTHER | PTHR37625 | OUTER MEMBRANE LIPOPROTEIN-RELATED | IPR017734 | Type VI secretion system, lipoprotein SciN | 4 | 158 | 1.3E-42 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.