Pseudomonas sp. PTA1, EW80_RS01430
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTTCGTGACGGTCAGTGAGGGTGCTGACGATGTCGAGCAAGCGGCCACCATCACTGAAGGTCTCGGCCTGACCGTAGGCGTGCACGGCGATGTAGTTCC AGGTCGGCACGACCTTGCCGTGCTCGGCTTTGCTCGGATACAAGCTTGGGCTGACGTAGGCGTCCGGGCCGGCAAAGATCAACATCGCCTCGGCACCGTC ACGCAAGTCTTTCCACTGCGGATTGGCTTTGGCCAGATGGCCGTAGAGCGTGCCGTATTCACCTTGTTCGCGATGCAGCAGCACCGGCACGTGGCTGGCT TGCAGGCCGCTTTCGCCGTGGCTGACCAGAATGGCCAGACGAGTGGTGAGGATCAGTTCGTGCAGCTGGGACAAGTCTTCGATGGCAAAAGCGCGTGGCG TGTACATGGACAGATTTTCCTTGGCGAATGCCTGCATCCTAGGCAGGCTATTGGTCCGTTGTAAGAGCCATTGATGAGCCATTTCATAGGTCCATTCGCC
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| DNA Sequence for Gene |
>EW80_RS01430
ATGCCCGATCTGCCACCCTTGTCGATGCCCTTCAACCCGGCCGGTATCGCGCTTGATCGCCGCCAAGGCCTGAGTCGCCAGCTCTATCAGGCTCTGCGCC TGCGGGTGCTGGATGGACGCCTGGCCAGTGGCACGCGATTGCCGGCCAGCCGAGATCTGGCCTCGGCGCTGGGCATTTCCCGCAACAGCGTGGTGCGCGC TTACGATCAGTTGTATGCCGAGGGCTTTATCGAAGGGCGCGTGGGCGACGGTACTTACGTGGCGCAATTGGCTCAGGCATCCACGCCTGAGAAAAAACTA TCCACAAATTCATCCACAGGCTTGTCAACAGGCTTACCCACAGCCTTATCCACAAATTGGCTGGATTTACCTGTGAATTCATCCAGCAAAGTTATCCACA GCGACGGATTTTCCCGCATTGAAAAGCATCATTTGCCACGACCACCGAGCGGTCCGCCGCGTGCTTTTCGGGTGGGTGTGCCTGCATTCGATCTGTTTCC GTTCGAGGTCTGGGCCAAGCTCAACGCGGCTTTCTGGCGTAAACCAGATCTGCAGCAGCTGTGTTACGGCGACCCAGCCGGTGATGCGCGACTGCGCAGC ATGATTGCTGCGTATTTGCGCAGTTCGCGCGGCATGCAGTGCACGGCTGAGCAAATTGTGATCACCAGTGGCGCACAGCAGGGCATCAGCCTTTGTGCAC AGTTGCTGGTCGAGCCGGGGGACGGTGTGGCGATCGAGAATCCGGGCTATCGCGCCGCCGGGCATGCCTTCGCTGTGGCGGGGGCGAAATTGCATGGGGT GGCGGTAGATAGCGACGGGATCGATTGCAGCGCCATGGCCCGGCTCAGCGATTGTCGGGTGGCTTATGTCACGCCGTCTCATCAGTACCCGACCGGAGTG GTGATGAGTCTGGCCCGGCGTCTGGAATTGCTCGCCTGGGCCGAGCGGGTCGGCGGCTGGATCGTCGAGGATGATTACGACGGCGAGTACCGCTACACCG GCGCACCGCTGGCGCCGTTGGCCGCACTTGATCGTCAGGGGCGTGTGCTCTACGTCGGCACCTTCGGCAAGGTCGCTTTTCCGGCGTTGCGCCTTGGTTA TCTGGTGCTGCCGCCAGCGCTGGTCGACGCGTTTGCGCAACGCCGCGCCGTCGATGTGCGGCACTCGGAGGTCAGCACCCAAGCGGTGATGGCCGAATTC ATGGCTGCCGGGCATTTCCAGCGGCATATCCGTCGCATGCGCCGGGCTGCGCTGAGCCGACGCAACTGCCTGCTCGAAGGCTGGCCGATGATCGCCGGTG TCGGTCAGTTGCCCGCCGTGTCGGCCGGGCTGCACCTGACCGTCGCCGTGGACAGCATCGAGCGCGAGCAGCAATTGATCGCTCAGGCCGCTGAGGTCGA TGTCGAAATCAACGGCCTGAGCAGCTACTGGTTACCCGACTCGACTACGCCCATGGATCAGCGCGCCGGCCTGGTGCTGGGTTTTGCCGCCGTACCAGAG CCTGCGATCAAAGCGGCGCTGTCGCGTCTGCGGCAGGCTTGGCAAGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGAACAGCGTTTCGGCGCTGCGACTGGAAATTTCGCTGCGATGGATTTCAATCAGCCTCTGATTATCCACACCCGTTATTTCGGCGACGCCCCCCATGCG GTGCTGAGCGAGCGTTTTCATATGTCCACGCACAAATGCACCAACGGGCGCGTCGACGCTGCTGTAATGGAAATGCGCATAGCAGAGGACCTTGTCGGTA TGCGCATCACGAATCTGATACTCGTCGAGAAAATCGTTCTGATGGCGCCTCAGACGCCGTCGGGTCAGGGTTTTCGAGATGTTCACTTCGCCTTTGTCCT TGAGCCACTCGACCCCGGCAGCTGTTGGCAGTTGTTGCTTGACCAGGCGGATTCGCGTGCTGGTGCCTTTTTGCTCCAGTGTCGTAGCCGCAGCGTCGAG CTTGTGGTTGAGCTCTTCGGACGGTTCATGCAGAGCAGCGGTGAGGTTACTCGCCGTTAACGCTTCATCGATCGCCGCACAGGCTTTGCGCAACAGGGTG
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| Amino Acid Sequence |
>GntR family transcriptional regulator
MPDLPPLSMPFNPAGIALDRRQGLSRQLYQALRLRVLDGRLASGTRLPASRDLASALGISRNSVVRAYDQLYAEGFIEGRVGDGTYVAQLAQASTPEKKL STNSSTGLSTGLPTALSTNWLDLPVNSSSKVIHSDGFSRIEKHHLPRPPSGPPRAFRVGVPAFDLFPFEVWAKLNAAFWRKPDLQQLCYGDPAGDARLRS MIAAYLRSSRGMQCTAEQIVITSGAQQGISLCAQLLVEPGDGVAIENPGYRAAGHAFAVAGAKLHGVAVDSDGIDCSAMARLSDCRVAYVTPSHQYPTGV VMSLARRLELLAWAERVGGWIVEDDYDGEYRYTGAPLAPLAALDRQGRVLYVGTFGKVAFPALRLGYLVLPPALVDAFAQRRAVDVRHSEVSTQAVMAEF MAAGHFQRHIRRMRRAALSRRNCLLEGWPMIAGVGQLPAVSAGLHLTVAVDSIEREQQLIAQAAEVDVEINGLSSYWLPDSTTPMDQRAGLVLGFAAVPE PAIKAALSRLRQAWQD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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