Pseudomonas sp. PTA1, EW80_RS00575
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTG ATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGCTGCCAAGCCCCACTTGATTAGGTGATGGCACTCTAATGAGCGGTAGCT ATCAGAGGGGTGGCTAGAAAATTACAATTTCGTAAGAAAGCTTTGTAATGCCCGTAAATACTGGGAAACCCAACCCGACACGATGATTTCGATACAAGCA ACAGAGATGGCAAACACGCGGTGCGAAGGTGCCGAATAACAGGTAGATGACGAAATTGTAATTGTCCTATCACCCTCCCGTTATCTTCGGCCTGCAAATA TGAGCTCGCGCTACGCTAGGCGCGCCGCCGGGTCAGAACAACTAACGACACCCGCGCCGGTAAACATAATAAAAACTGCCGTGAATCAAAGGAGCATCGG
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| DNA Sequence for Gene |
>EW80_RS00575
ATGAAAATCAAAGTACCACTGTATTTGGCGGCAGTTTCTGCGCTGTCTGGAAGCTATGCTATTTCGGCACAAGCTGAAGACAAGCCAGAAGGCTTCATTG AAGGCAGCAGCCTTACAGTGTTGAACCGTAACTTCTACTTCAACCGTGATAACCGCGACAGCACCGCCCCCACTTACAACAGTGGCAAGGGCAATACGAA CGGCTACTCCGAAGCCTGGGCGCACGCGATCATCAGCAAATTCAACTCCGGGTTTACCCAAGGTACCGTTGGCTTTGGCGTTGATGCCTTTGCCATGATC GGCCTCAAGCTCGACACCGGTGATGGGCGCAACGGCGGCCGTAGCTCCTTCGACGTGCTGCCCGTTGATAACAAGGGTGAAGCTCGCGACGAATACACCA AGGTCGGCGGCGCAGCCAAAGTCCGCTTGTTCGATACCATCGTGAAAGTGGGTGATGTCTTCCCATCGACCCCGGTCGTCGCATCGGGTGACTCTCGCCT GCTGCCAGAGAGTTTCCGCGGTGTGACCGTTGAGAACACCAGCATCCAGGGCCTTACCCTCCAGGGTGGTCGTCTGCATGCGATGAGCCAGCCGGTCTCA AGCAACCTGAACGACAACTTCGTGACGTTCTACGGCGGCCCGGTCAACTCGCCATGGATCGGTTACGGTGGCGGTGACTACTCGATCAACGACAACTGGA CTGTGAGCGTCTACGCCAGCCAGCTGAAAGACGTCTGGAATCAGTACTACGCCGGCACAAGCGTGGTTTACCCGCTGAGCGACGATCTGGCGCTGATCGG TGGCTTCAACTACTACAAAGCCGTAGATGAAGGTAAGAAGCGCCTGGGTGAATTCGACAACAACATCTGGAGTGCCAAGGTCGGTGTGCGTTACGGTGCC CACACCCTGGCCCTGTCGCATCAGCGCAACAACGGCGACGACGATTTCGACTACCTGCGTCAGTCGGACTCGATTTTCGTCGACAACTCCATCCAGTACA GCGACTTCAACTCGCCGAAAGAGCGTTCCTGGATGCTGCGCTATGACCTGAACTTCACCAGCTACGGCATTCCAGGCCTGACGTTCATGACGCGCTACGC CAGAGGCTCGGGTGCGGATTACTCGAACGCTAACCAGTTCTACATGCGCACCGACGACAACGGCAACCCGCTCGACAATCAGAAGCGTTGGGAGCGTGAC GTCGAAGTCAAATACGTTGTCCAAACCGGTCCGGCAAAAGATCTGTCCTTCCGGTTGCGCCAGGCAACCACGCGTGCCACTGCTTTCGAATCGGATCTGG ATGAAACTCGTGTAATCATCGAGTACCCGCTTTCGATTCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCGCTAACTGGGCCAGTTATCCATTGGCGGGTCCTGTTAGTAAAACGAGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGG ATATTTGGCGCCCATTGGGCGCCTTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGA CCAGTCTCTTCAATGTGAGCGACCTCGCCGTCATCTGAGCGGAACGAAGCCAGCACAAAGAAGAAAATAACCCAATACTTCATAAGGTCAAATCACCTGC TGGAGAGAGGGCCCGCAACTGTCAAACCCAAACCGCGACAAGATATACCGCCAGACTATCAACTGTATTACCTAGAAATTACAAATCCGTCATTTGAGCC CCGGCACGCTCATTTTGATTTACCATCCCTTTCAATAATGCCGGCGCGCGTGCGCGGTTAATTGCTCAGTGATATCGAGACAAAATCCCATGCGAATTCT
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| Amino Acid Sequence |
>porin
MKIKVPLYLAAVSALSGSYAISAQAEDKPEGFIEGSSLTVLNRNFYFNRDNRDSTAPTYNSGKGNTNGYSEAWAHAIISKFNSGFTQGTVGFGVDAFAMI GLKLDTGDGRNGGRSSFDVLPVDNKGEARDEYTKVGGAAKVRLFDTIVKVGDVFPSTPVVASGDSRLLPESFRGVTVENTSIQGLTLQGGRLHAMSQPVS SNLNDNFVTFYGGPVNSPWIGYGGGDYSINDNWTVSVYASQLKDVWNQYYAGTSVVYPLSDDLALIGGFNYYKAVDEGKKRLGEFDNNIWSAKVGVRYGA HTLALSHQRNNGDDDFDYLRQSDSIFVDNSIQYSDFNSPKERSWMLRYDLNFTSYGIPGLTFMTRYARGSGADYSNANQFYMRTDDNGNPLDNQKRWERD VEVKYVVQTGPAKDLSFRLRQATTRATAFESDLDETRVIIEYPLSIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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