Pseudomonas sp. PTA1, EW80_RS21065
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PTA1 EW80DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGAACAACTGTTCAAAGGAGCCGTAGGCGCCAAGGCGGGACTCGATATCGAGATCAGTGATTTGCACACGGTGTGGCAGGAGGACGACATGCTGGCTGTG AGCTACGTCGAAACCCAACGCTTGGACGGCGCTCAACACTCGCGGGTCGCAGTGGCGATCCTGAGCGGACAAACTGAAGGGGTGAAGTGGGTGTATTTGC ATGAAACGCCACTGAGCCGGCAAGTCTGAGACCAGGCCACAAGATATTCGGTTTTCCGAACACGACTCCACAGTCGATTCGGTTAACCGGATCATACCTT CATAAAATTACCGCCATAAAACTTTAATAACGTTATAAAACAACCGGTTAACGGACTTCGACTGCTCTGGCACGAGTCATGCTCTACACTCTCTCGACGA ATGCCTGCTGTGCCAGCACTTCAGGAGCCGTCAGGCATTCGAAGCACAAAAAGGGCCGACAAACTGGCTCCATAAAAAAAACAATGTCGAGGAAAATTTG
|
|
| DNA Sequence for Gene |
>EW80_RS21065
ATGCGCATCGTTCCCCATATCCTGGGCGCAGCCATTGCTGCCGCTCTGATCAGCACGCCAGTTTTCGCCGCCGAACTCACCGGCACCCTGAAGAAGATCA AAGAGTCCGGTGTCATCACCCTGGGCCACCGTGACGCCTCCATTCCGTTCTCCTACATCGCTGATGCGTCCGGCAAGCCGGTCGGCTACTCGCACGATAT CCAGATGAAGATCGTCGACGCGATCAAGAAAGACCTCGACCTGCCGAACCTGCAAGTCAAATACAACCTCGTCACCTCGCAGACCCGTATCCCGCTGGTG CAGAACGGCACCGTGGACGTCGAGTGCGGTTCGACCACCAACAACGTCGAGCGTCAGCAGCAGGTCGACTTCTCCGTCGGCATTTTCGAAATCGGCACTC GTCTGCTGTCCAAGAAAGACTCCAAGTACAAGGATTTCGACGATCTGAAAGGCAAGAACGTCGTAACCACCGCCGGCACCACCTCCGAGCGCATCCTCAA GGCGATGAACGCCGACAAGCAGATGGGCATGAACGTCATCTCCGCCAAAGACCACGGCGAGTCCTTCCAGATGCTGGAATCGGGCCGTGCCGTTGCCTTC ATGATGGATGACGCACTGCTGGCCGGCGAAGCCGCCAAGGCCAAGAAAGCCGCCGATTGGGAAGTGACCGGCACGCCACAGTCGTACGAAATCTACGGCT GCATGATGCGCAAAGGCGACGAGCCGTTCAAAAAGGCTGTGGATGACGCGATCAAGGCCACTTACGCTTCGGGCGAAATCAACAAGATCTACGAGAAGTG GTTCATGCAGCCGATTCCGCCAAAAGGCCTGAACCTGAACTTCCCGATGAGCGACGAGCTCAAGGCGCTGATCGCCAATCCGACCGACAAAGCGGCTGAC GACAAGAAGTCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTTCTGACTAACCTTATCCCCTGAGGAGGCGCCTGCCTTTTCAGGGGATGGTCACTCCCTGCTGGCATTTTTCTGGAAACACTCGAACCGGTGGCTGTC GAGCCGATCGCGTGTGCCCGGTCTTTGAAAAAAGACTGGGGAGGGAACGGAGTTCCCCAGGCGGGCACTTGTACATCGATCGAATCGAGGGGAGACCCTA ATGAATTACAACTGGGACTGGGGCGTGTTCTTCAAGTCCACCGGTGTGGGCAGCGAGACCTATCTCGACTGGTTCATCTCCGGTCTGGGCTGGACCATCG CCATCGCCATCGTGGCGTGGATCATCGCCCTGCTGCTCGGCTCGCTGCTGGGCATCATGCGCACCGTGCCGAATCGCATCGTATCGGGCATCGCGACCTG CTACGTCGAGCTGTTCCGTAACGTGCCGCTGCTGGTGCAGCTGTTCATCTGGTACTTCCTGGTGCCCGATCTGCTGCCGCCGGATCTTCAGGAGTGGTAC
|
|
| Amino Acid Sequence |
>ABC transporter
MRIVPHILGAAIAAALISTPVFAAELTGTLKKIKESGVITLGHRDASIPFSYIADASGKPVGYSHDIQMKIVDAIKKDLDLPNLQVKYNLVTSQTRIPLV QNGTVDVECGSTTNNVERQQQVDFSVGIFEIGTRLLSKKDSKYKDFDDLKGKNVVTTAGTTSERILKAMNADKQMGMNVISAKDHGESFQMLESGRAVAF MMDDALLAGEAAKAKKAADWEVTGTPQSYEIYGCMMRKGDEPFKKAVDDAIKATYASGEINKIYEKWFMQPIPPKGLNLNFPMSDELKALIANPTDKAAD DKKS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|