Pseudomonas sp. MT-1, MT1_RS16500
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MT-1. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCCCCTTGCCTTGCGTGGCGCGCACCGAGCTGCAGAGGTTGGTCTTGCCGGATTTGCAGAATTTGCACTGCCGGCATTCGGCCGTGTACAGCGGGATC ACGTGATCGCCCACGGCAACCGAAGTGACGCCCTCGCCTACCGCCTCGACGATCCCGCCACCTTCATGGCCGAGGATGCAAGGGAATACACCTTCCGAAT CTTCGCCGGAGAGCGTGTACGCGTCGGTATGGCAGACGCCCGTCGCGACGATGCGCACCAACACTTCGCCAGCCTTGGGCGGCTCGACGTCCACTTCGAC AATTTGCAGAGGTTGGTTCGGGGCAAACGCGACGGCGGCGCGGGACTTGATGGTCATGGCTGGCGGTACTCGTGGATGGAAAGTAACACGCAGTGTAGTT TCATCGATGGATAGGGTTAATAAGCTGTTCGTGGAAACATTATTGCTGCCCAGGGATAATCGCAACGCACCGCTTTGGGCAACTCGCAAAAGGACCGCCT
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| DNA Sequence for Gene |
>MT1_RS16500
ATGAATCGATGGGAAGGACTGGATGAATTCGTAGCCGTCGCTGAGTGCGGAAGCTTCATGCAGGCCGCAGGGCAACTGCGCGTGTCGTCATCTCACGTCA GCCGCCAAGTGGCACGCCTCGAGGAACGTCTTCAGGCACGGCTGCTCTATCGCACGACCCGCCGGGTTTCCCTGACCGAAGCCGGTCATACCTTTCTCTC GCGCTGCCAGCGCCTGATCGAGGAGCGTGACGAAGCTTTTCATGCAATCAGCGACCTGCATGCTGCGCCCACTGGTCTGCTGCGTATGACAGCTGCGGTC GCGTACGGTGAACGCTTCATCGTGCCGCTGGTGAACGAATTCATGGCGCAGCATCCGCAGCTGAGGGTTGATATCGAACTGTCCAATCGCACCCTCGATC TGGTGCAGGAAGGCTACGACCTGGCTGTACGCCTGGGCCGGCTGAGCGAATCTCGGCTGATCGCCACACGCCTTGCCCCACGCGCCATGTATCTATGCGC GGCGCCAAGCTATCTCGAGCGCTACGGCCGCCCGCATACCCTGTCCGAGCTATCGCGACACAATTGCTTGGTTGGCACTGGCGATACCTGGATGTTGCAG GTCGACGGCCGCGAGCAGCCGTTCAAGCCATCGGGCAACTGGCGCTGTAACAGCGGGCAGGCGGTACTGGATGCTGCGCTTCGGGGCTTCGGTCTTTGCC AGCTACCGGACTATTACGTCCAGGAGCCACTGCGCCGCGGTGAGCTGGTGTCCCTGCTGGAAACGCATCAGCCACCGAACACGGCGGTGTGGGCCGTCTA TCCGCAACGGCGTTATCCGCTACCGAAGGTCCGCCTGCTGATTCAAGCATTGAAGGACGGCCTCGCAACTCGTCCCGAATATCGGAACGAACGCGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTGCGACTGCGCCGCGCGTCCGACTGCCGACTTGAGGCGGAACCCGACTTAACCCACCACGTCGAAATTCTGAAGCCGGTGCCTCCGGCCCTCTGCTTG AGCGAGCCGGCCAATCAATCAGGAGGACATCATGCAGATTCTGGTGAACAGCAATCATAGCGTCGACGTGACCAGCAGCCTTGAGGAGCACGTAAAAGCG ACGGTCGAGAGCGAACTGGAGCGCTTCGACGATCAGCTGACCCGAGTCGAAGTTCATCTCAACGACGAAAATAGCGGCAAAAGCGGCCCGCAGGATAAGC GCTGCCAGATGGAAGCGCGGGTCAAGGGACACGAGCCCATTTCGACCAGCCACAAAGCGGACTCGCTGAATCTTGCCATTGACGGCTGCGCCGAAAAGCT CAGCCATGCCCTTGCCCATGCGCTAGACAAGAAACTCAACCACCACTGAATGCCGCCTGATGCGACCCGCTGAAGCGGGCCGATAGAGACCATGAGGAAC
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MNRWEGLDEFVAVAECGSFMQAAGQLRVSSSHVSRQVARLEERLQARLLYRTTRRVSLTEAGHTFLSRCQRLIEERDEAFHAISDLHAAPTGLLRMTAAV AYGERFIVPLVNEFMAQHPQLRVDIELSNRTLDLVQEGYDLAVRLGRLSESRLIATRLAPRAMYLCAAPSYLERYGRPHTLSELSRHNCLVGTGDTWMLQ VDGREQPFKPSGNWRCNSGQAVLDAALRGFGLCQLPDYYVQEPLRRGELVSLLETHQPPNTAVWAVYPQRRYPLPKVRLLIQALKDGLATRPEYRNERD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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