Pseudomonas sp. MT-1, MT1_RS07775 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MT-1. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCTGTCGTCTCGTTACCGCGAGCTGGCGCGTAAGGTTCATCCCGACCGGTTTGCTGATGCTGGTGAGGCCGAGCAGCGTTACGCAATCGAGCGATCGA CGAATCTGAACGAGGCCTATCAGACCTTGAAAAGCCCGTCGCGTCGGGCTCGCTATCTGCTGACGCTCGAAGGTCGCGAGATGCCGTTGGAGGCGACCGT TCAGGATCCCGCTTTCCTTATGCAGCAGATGCAGTGGCGCGAAGAGCTCGAGGAGTTGCAAGACGATGCCGATATCGCAGGCGTAGCTTCCTTCAAGGCT CGCCTCAAAGTGGCTCAGCAAAATCTCAATGATTCTTTCGCCGGCATCTGGCGGGATGAGTCGCAGCGCGAGGAGGCGGAACGGCTGGTGCGCCGCATGC AATTTCTCGACAAGCTGTCCCAGGAAGTGCGCCAGTTGGAAGAGCGCCTCGACGATTAACCCCGCGTAGCGCCAGACGCTGCGCCCGATATCAGACAGAC
|
|
| DNA Sequence for Gene |
>MT1_RS07775
|hscA
ATGGCCTTACTTCAGATAGCTGAACCCGGACAAAGCCCGCAACCTCACCAGCGTCGCCTGGCGGTTGGCATAGATCTGGGCACTACCAATTCACTCGTTG CAGCCCTGCGTAGTGGGGTTACGGCACCGTTGGCCGATGCTGATGGAGAGGTGATCCTGCCGTCCGCTGTGCGTTATCACAGCGCTCAGGTTGAGGTGGG GCGGGCGGCGAAAGCTGCTGCGGCCAGCGATCCGTTGAATACCATTCTGTCCGTCAAGCGTTTGATGGGGCGCGGTATTGGTGACGTGAAGCAGCTGGGT GGGCAGCTGCCGTATCGATTCAGCGAGGGGCAATCACAGATGCCCTTCATCGAGACGGTGCAAGGCGCCAAAAGCCCGGTAGAGGTCTCTGCGGAGATTC TTCGCGCGTTGCGTGAGCGTGCGGAGGCAGTGCTGGGGGGCGAGCTGGTCGGTGCGGTGATCACGGTGCCGGCATACTTCGATGATGCGCAACGTCAAGC GACCAAGGATGCTGCGCGTCTTGCTAATCTCAACGTGCTGCGCCTGCTAAACGAGCCTACCGCCGCCGCCGTTGCCTATGGTCTGGACCGCGAAGCTGAA GGGGTCGTGGCGATCTATGACCTGGGGGGCGGCACCTTCGATATTTCCATCCTACGTCTGACCAAGGGTGTGTTCGAGGTGCTGGCTACTGGTGGCGATA CAGCGCTAGGTGGGGATGACTTCGATCATGCGGTTGCCGGCTGGATTCTGGCTAAGGCTGGTGCCTCACAGGATCTCGATCCGGGCACCCAGCGTGAAGT GCTGAAAATTGCCTGTGATGCCAAGGAGCAGCTCAGCGAAACCGAAGCTGTCGAAGTACGCTACGCCGGTTGGCAGGGCGTTCTGACACGTGCCATGTTC AACGAACTCATCGATCCGATGATCGCTCGCAGTCTAAAGTCGTGCAGGCGCGCGCTGCGTGATTCGTCTGTAGAACTGGAAGAGGTCCATGCGGTGGTCA TGGTAGGCGGCTCCACTCGTGTGCCGCGGGTTCGTGAGCGGGTTGGAGAGATGTTTGGCCAGGATCCGCTGACCGATATCGATCCCGATCAGGTGGTCGC GATCGGTGCAGCAATTCAGGCTGAGACGCTGGCCGGCAACAATCGCGATGGAGAGGAGCTGTTGCTGCTGGATGTGATCCCTCTGTCGCTCGGGCTGGAA ACAATGGGTGGTCTGATGGAAAAGATCATTCCGCGCAATACCACCATTCCGGTCGCCCGAGCTCAGGAGTTCACCACGTACAAAGACGGCCAGACGGCCA TGATGATTCATGTGCTGCAGGGAGAGCGTGAGCTCATTGCCGATTGCAGGTCTTTGGCTCGCTTCGAGCTGCGGGGCATCCCGCCAATGGTGGCCGGGGC GGCGAAGATCCGAGTCACCTTCCAGGTCGATGCGGACGGGCTGCTCAGTGTTTCGGCGCGTGAGCTGGCGTCCGGCGTCGAGTCGAGTATCCAGGTGAGG CCGTCTTATGGGCTGACCGATGGCGAGATTGCTCGCATGTTGGAAGATTCGTTTCATAAGGCAAGTGAAGACAAAACGGCCCGAGCGCTTCGTGAGCAGT TGGTCGATGCGCAGCGATTGCTTGAGGCGGTTGAGGGGGCATTGGCGGTTGATGGCGAGCGTTTGCTAGATGATGAAGAGCGCGCGGCAATCAAGTCGCA GGTGCACGAATTGCGTGGTCTTCTTGATAGTCAGGATGGTCTCGCCATCGAACGCCAGGTCAAGCGTCTTAGCCAGATTACCGATGCCTTTGCAGCACGC CGACTAGATTCCACCGTCAAGGCCGCGTTGGCCGGACGGCGGCTTAACGATATCGAGGATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACCAGATGCCGCAGATTGTTTTCCTGCCTCATGCCGACCACTGTCCGGAAGGGGCGGTAGTAGATGCTCAGCCCGGTGAAACGGTGCTCGACGCTGCGCT GCGAAATGGCATCGATATCGAGCATGCTTGTGAAAAATCCTGTGCCTGCACGACCTGCCATGTGGTGATCCGTGAGGGCTTTGCTTCTCTGGAAGCCTCC GACGAGCTGGAAGATGACATGTTGGACAAGGCGTGGGGGCTCGAGCCTACGTCCAGGCTGTCCTGTCAGGCTGCTGTCGCGGATATCGACCTGGTGGTCG AGATTCCGAAATACACCATCAATCAAGTGTCCGAAGGTCATTAAGGCGAGGTGAATCATGGCGCTTAAATGGTCTGACGTATTGGATATCGCGATTGAGC TGGCTGAGCGCAAGCCTGACGTGGATCCCCGCTACGTGAATTTCGTCGAACTGCATCGTTGGGTAGTCGAGCTACCGGGTTTTTCTGACGATCCGACGCG
|
|
| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGVTAPLADADGEVILPSAVRYHSAQVEVGRAAKAAAASDPLNTILSVKRLMGRGIGDVKQLG GQLPYRFSEGQSQMPFIETVQGAKSPVEVSAEILRALRERAEAVLGGELVGAVITVPAYFDDAQRQATKDAARLANLNVLRLLNEPTAAAVAYGLDREAE GVVAIYDLGGGTFDISILRLTKGVFEVLATGGDTALGGDDFDHAVAGWILAKAGASQDLDPGTQREVLKIACDAKEQLSETEAVEVRYAGWQGVLTRAMF NELIDPMIARSLKSCRRALRDSSVELEEVHAVVMVGGSTRVPRVRERVGEMFGQDPLTDIDPDQVVAIGAAIQAETLAGNNRDGEELLLLDVIPLSLGLE TMGGLMEKIIPRNTTIPVARAQEFTTYKDGQTAMMIHVLQGERELIADCRSLARFELRGIPPMVAGAAKIRVTFQVDADGLLSVSARELASGVESSIQVR PSYGLTDGEIARMLEDSFHKASEDKTARALREQLVDAQRLLEAVEGALAVDGERLLDDEERAAIKSQVHELRGLLDSQDGLAIERQVKRLSQITDAFAAR RLDSTVKAALAGRRLNDIED
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|