Pseudomonas sp. MT-1, MT1_RS00030
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MT-1. [Details] | |
| DNA Sequence Upstream of Gene |
GCATCAACGTCACCTTCAAGCCTGCCACCGGCGGCGCTCAGGAAGAACTCGAACTGCCACTGAAGTTGATGGTGCTCGGCGATTTCACCCAGCGTGCCGA CCATCGCAAGATCGAGGACCGCAAGCCGATCGCCATCGACAAGAACAGCTTCGACGAGGTCCTGGCCAAGCAGGAGCTGAACCTCACTTTCTCGGTGCCG AACCGTCTGCAGGACGAGCCCACCGATGAAGAGCTGGCCGTGCAGCTGAATATCAACTCGATGAAGGACTTCAACCCGGCCAACCTGGTCGAGCAGGTTC CCGAATTGAAAAAGCTGATGGAACTGCGCGACGCGCTGGTCGCCCTCAAGGGCCCGCTGGGTAACGCCCCGGCCTTCCGCAAAGCGATTGAAAGCGTGCT CGCCGACGACGACTCGCGTGACCGTGTACTCGGTGAGCTGGGTCTCGCCGCGAAAGAACAATTGGACGCCTGATTACTTCCGACAAGGAACGCCAACACC
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| DNA Sequence for Gene |
>MT1_RS00030
ATGAGCACTAGCGCAGCAGCCGTTGAAAGCGGCAAGAACCTTGCCGAACTCGGCATTCTCGACCGCATCATCGCTGAAACCAAATTGACGCCCGATGACG AGGCCTACGACATCGCCAAGCGCGGCGTGTCAGCTTTCATCGAAGAACTCCTCAAGCCGCAGAACGAGCACGAGCCGGTCAAGAAGGCCATGGTCGACCG CATGATTGCGGAAATCGACGCCAAGCTCAGCCGTCAGATGGACGAGATTCTCCACCACCAGCAGTTCCAGACGCTGGAATCCTCCTGGCGCGGCCTCAAG CTGCTGGTCGATCGCACCAACTTCCGCGAGAACATCAAGCTCGAAGTCCTCAACGCGTCCAAGCAAGACCTGCTCGATGACTTCGAGGACAGCCCAGAAG TGGTCCAGTCCGGCCTATACAAGCACATCTATACCGCCGAATACGGCCAGTTCGGCGGCCAGCCGGTCGGTGCCCTGATTGCTAACTACTTCTTCGACCC GAGCGCGCCGGACATCAAGACCATGCAGTACGTGGCCTCGGTCGCCAGCATGTCCCACGCGCCCTTCATCGCGGCGGCCGGCCCGAAATTCTTCGGTCTG GAAAGCTTCACAGGCCTGCCGGACCTGAAGGATCTGAAAGATCACTTCGAAGGCCCGCAGTTCGCCAAGTGGCAAAGCTTCCGCGAGCAGGAGGATGCCC GTTACGTCGGCCTGACCGTACCGCGCTTCCTGCTACGTAACCCCTACGACCCGGAAGACAACCCGGTCAAATCTTTCGTCTACAAGGAAAACGTGGCCAA CAGCCACGAGCACTACCTGTGGGGCAACACCGCGTACACCTTCGCTAGCCGTCTGACCGACAGCTTCGCCAAGTTCCGCTGGTGCCCGAACATCATCGGC CCGCAAAGCGGTGGCGCGGTGGAAGACCTACCGCTGCACCACTTCGAGAGCATGGGCGAGATCGAAACCAAGATTCCGACCGAAGTGCTGGTCTCCGACC GTCGCGAATACGAACTGGCGGAAGAAGGCTTTATTGCCCTGACGATGCGCAAGGGCAGCGACAACGCCGCATTCTTCTCGGCCAACTCTGCGCAAAAGCC AAAGTTCTTCGGCAACAGCGAAGAAGGCAAGAACGCCGAACTCAACTACAAGCTCGGCACTCAGCTGCCTTACTTGTTCATCGTCAACCGCCTCGCGCAT TACCTCAAAGTGCTGCAGCGCGAACAGATCGGCGCCTGGAAAGAGCGTACCGACCTGGAGCTGGAGCTGAACAAGTGGATTCGCCAGTACGTGGCCGACC AGGAGAACCCAAGCTCCGAAGTCCGAAGCCGTCGTCCGCTGCGCGCCGCGCAAGTCGTCGTCAGCGATGTCGACGGAGAGCCGGGCTGGTACCGCGTCAG CCTGAACGTGCGCCCGCACTTCAAGTACATGGGTGCTGATTTCACCCTGTCGCTGGTTGGCAAGCTGGACAAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCATCCATGGCCTACGGCAGCCTTTTCGAACGCCTCGGCGGTGAGGCCGACAAACGCGCCGGCTGGAGTCGCGAAGTCGCGGCAATGGCTTCGGTGGCTG CCCATCTGGCCAAAATGCTCAGCACCCGGGCGGGCAGCGTGCAAACGTTGCCCGACTATGGGTTGCCCGATTTGAACGATATGCGCCTGTCGCTGCACGA CTCGCTGCAACAGGCGCGTATCGCCATTGAACGCTTCATCGAAGCGTACGAACCCCGCTTGAGCCAGGTCCGGGTGATATCCCTGCCCCGCACGCACGAT CCACTGAGCCTGTCCTTCGCCATCAAAGGTCTGCTGGAAGTCGACGGTTCGAAGCGCCAAGTAAGTTTTTCCGCGAGCCTGGACGGCAGCGGACAAGTGA AAGTCCACTAAGGAGAGCCTGATGTCCGGTAAACCCGCAGCCCGACTGGGCGACCCCACCAATTGCCCGAAGAAGGGCCACGGCACCAACCCGATCGCGG
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| Amino Acid Sequence |
>type VI secretion protein
MSTSAAAVESGKNLAELGILDRIIAETKLTPDDEAYDIAKRGVSAFIEELLKPQNEHEPVKKAMVDRMIAEIDAKLSRQMDEILHHQQFQTLESSWRGLK LLVDRTNFRENIKLEVLNASKQDLLDDFEDSPEVVQSGLYKHIYTAEYGQFGGQPVGALIANYFFDPSAPDIKTMQYVASVASMSHAPFIAAAGPKFFGL ESFTGLPDLKDLKDHFEGPQFAKWQSFREQEDARYVGLTVPRFLLRNPYDPEDNPVKSFVYKENVANSHEHYLWGNTAYTFASRLTDSFAKFRWCPNIIG PQSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFIALTMRKGSDNAAFFSANSAQKPKFFGNSEEGKNAELNYKLGTQLPYLFIVNRLAH YLKVLQREQIGAWKERTDLELELNKWIRQYVADQENPSSEVRSRRPLRAAQVVVSDVDGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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