Pseudomonas sp. MRSN12121, TO66_RS21455

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. MRSN12121, complete genome. [Details]
DNA Sequence Upstream of Gene
CAAGTCCCTGGACAGCGCCAGCCAGTACCTGGACCGCCTGGAGATCGCGCACAAGGTCAGCATCAAGGACGGCGCCTTCACCACCACCGACCTGTCCACC GGCCAGCGCAAGCGCCTGGCCCTGGTCAACGCCTGGCTGGAGGAGCGCCCCGTGCTGGTGTTCGACGAATGGGCGGCGGACCAGGACCCGGCCTTCCGGC GGATTTTCTACACCGAGCTGCTGCCGGACCTCAAGCGCCTGGGCAAGACCATCATCGTGATCAGCCACGACGACCGTTACTTCGACATCGCCGACCAGCT GGTGCGCCTGCGCGCGGGCAAGGTGGTGGAGGCAATGCAGCCGGCCTGATTTTTTTCCGGTTTATTCATGGATGAACGTCTCACTATCGGTAATGAGAAT TAACCGCAATAAATGCCCATAACTGCCCACCCAAAACACAGAAGAGAACGCATCCATGTCAGCACTGCTCGGTCTCAGTCCCCTGAGTAAAGCGCTATCC
DNA Sequence for Gene
>TO66_RS21455
ATGCGAAAGGCCCTGAACATCAACCTGCTTCCCAGCGCCCTGGCCCTTGCCGTGTCGCTGCCGGTAGCCGGTTATGTACAGGCGCAGGAGATCGAGCTGG ACATTCCTGTGCAATCTCTGGGCAGCGCCCTGCAAGAGTTCGGGCGCCAGACCAACCTGCAGGTGCTCTACAGCCCACAGGACGTGCAAGGCAAGCAGAG CACCGCGGTGAAGGGCAAGATGGACGCGCAGCGGGCCATCGGCCTGCTGCTGACCGGCAGCGGCATCCGCTACAGCCTGCAGGGCAACTCGCTGACCCTC AGCGCCACCAGCGCCGGCGCCGAGGGCCTAGAACTGAGCCCGACGCAGGTCACCGCCAACCAGTTGGGCAACGTCACCGAAGGCACCGGCTCCTACACCC CGGGCACCATCGCCACCGCCACCCGCCTGCCGCTGACCCTGCGCGAAACCCCGCAGTCGATCAGCGTGGTCACCCGCCAGCACATGGACGACTTCGCCCT CAACAGCGTCGACGCCGTGATGCGCCACACCCCGGGCATCACCGTATCGGCGTTCGACACCGACCGGACCAACTACTATTCCCGCGGTTTCTCGATCAAC AACTTCCAGTACGACGGCATTCCCTCCGCCGTGCGCAACGTCGCCTATTCGGCGGGTAACACCCTGAGCGACATGGCGATCTACGACCGCATCGAAGTGC TCAAGGGCGCGTCCGGCCTGCTCAGCGGCGCCGGCTCCCTGGGCGGCACCATCAACCTGGTGCGCAAGAAGCCCACCGCCGACTTCCAGGGCCACGCCAC CCTGGGCGCGGGTTCCTGGGACAACTACCGCAGCGAACTGGATGTCAGCGGCCCGCTGACCGAAACCGGCAACGTCCGCGGCCGGGCCGTGGCCGCCTAC CAGGACAAGCAGTCGTTCATCGACCGCTACTCGAGCAAGAACTCGGTGTTCTACGGCATCCTCGAGTTCGACCTGTCGCCCGACACCCTGCTGACCGTGG GCGCCGACTACCAGGACAACGACCCGCGGGGCTCCACCTGGTCCGGCAGCTTCCCGCTGCTCAACTCCAAGGGCGAGCGCAACGACGCCAAGCGCTCGTT CAGCAACGCCACCGACTGGAGCAGCTGGCAGCAGTACACCCGCACGGTCTTCGCCACCCTGGAACACGACCTGGGCGACGGCTGGGTGACCAAGCTGCAA CTGGACCACAAGTACAACGGCTATGACGCGCAGATGGGCTCCATCCAGTTCGACCAGCCGCAACCCGACGGCAGCGCCGAAATCAACGCGCAGCGCTACA AGGGTGACACCACCAGCGACTCGGCCGACCTGTATGTCAGCGGCCCGTTCAGCCTGCTCGGCCGCGATCATGACCTGGTGATCGGCGGCTCGATCAGCAA GGCCCACTGGAAAGGCAAGGGCTACTGGGACGAAACCTTCTCGGTGCCCAACCGCGTGGACTACAACAACTGGCACGGCAACCTGCCCAAGCCCGACTGG GGCCCGGTGTCGCAGCGCACCGATGACGTGATCCGCCAGACCGGGGTCTACCTGACCACCCGCCTGAACGTCACCGACGACCTGAAATTCCTGCTCGGCG GGCGCGTGGTCAACTACAGCCTGACCGGCCTGACCCCGACCTACACCGAATCCGGACGCTTCATTCCCTATGCCGGCGCCATCTACGACCTGAACGAGAA CTTCTCGGTCTACGCCAGCTACACCGACGTGTTCATGCCTCAGGAGAACTTCAACCGCGATCGCGACAACAAGCTGATCGAGCCGGATGAAGGCGAGAAC TACGAAATCGGCATCAAGAGCGAGTTCTTCGACGGTCGCCTGAACGCCAGCCTGGCCTACTTCGAGGTCAAGGAAACCAACCGCTCGGTGCCGGACGACG CCTACAACAACCAGACCCCGACCCCGCCCAACTACGCCTTCAAGGGCAGCAAGGCGACCACCAAGGGCTACGAGCTGGAAGTGTCCGGCGAGCTGGCCCC GGGCTGGCAGGTGCAGGGCGGCTACACCCACAAGGTGGTGCGCGACGACAACGATGTGAAGCTCTCGACCTTCGAGCCCGAAGACCAGCTCAGCCTCTAC ACCACCTATAAGCTCTCCGGCCAGCTGGACAAGATGACCGTCGGCGGCGGCGCGCGCTGGCAGAACAAGGCCTGGCAGCAGATCTGGAACAGCCCCAAGG GCGTGAACGAGGACATCACCCAGGAATCCTACTGGGTGGTGGACCTGATGACCCGCTACCAGATCACCCAGAACCTGTCGGCGACGCTCAACGTCAACAA CATCTTCGACAAGTACTACTACACCAACGTCGGCTTCTATAACTCGGCCATCTACGGCGAACCGCGCAACGTCATGGTCACCACCCGCTGGGACTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCCCGCACCGCCCCACGCCCCGGAAAGGCCCCGCCTTCCCGGGGCGTTTTCATTTGCCCGCCCTGCCAGCGGCCACAACATGCGCATCGTCCCCCGTAG GAGCGAGGCTTGCCCGCGATCCAGGCAACGCGGTCTGTCTGCATGGACGCCATCGCGAGCAAGCTTCGCTCCTACGGATGTCGGGCTGATACCTCGCCCC TGTAGCCGCTGCCGAGCTTTAGCGAGGCTGCGATCGGGTGGGCGGCATTCCGATGCAGCCCCGAAAACCCTGACAACGCGGTGTACCTGACCTGCACGGT CGCCTGGGATGGCGCCTGCTGCGCAGGCGATCGCAGCCTCGCTGACGCTCGACAGCGGCTACAGGCATTCGCATCGACAGGTTCGGACCGTGCCCGTAGG AGCGAGGCTTGCCCGCGATCCAGGCGACGCGGTTTGTCTGCACAAACGCCATCGCGAGCAAGCTTCGCTCCTACAGATGTCGTGTTAACGCCTCGCATCT
Amino Acid Sequence
>ligand-gated channel
MRKALNINLLPSALALAVSLPVAGYVQAQEIELDIPVQSLGSALQEFGRQTNLQVLYSPQDVQGKQSTAVKGKMDAQRAIGLLLTGSGIRYSLQGNSLTL SATSAGAEGLELSPTQVTANQLGNVTEGTGSYTPGTIATATRLPLTLRETPQSISVVTRQHMDDFALNSVDAVMRHTPGITVSAFDTDRTNYYSRGFSIN NFQYDGIPSAVRNVAYSAGNTLSDMAIYDRIEVLKGASGLLSGAGSLGGTINLVRKKPTADFQGHATLGAGSWDNYRSELDVSGPLTETGNVRGRAVAAY QDKQSFIDRYSSKNSVFYGILEFDLSPDTLLTVGADYQDNDPRGSTWSGSFPLLNSKGERNDAKRSFSNATDWSSWQQYTRTVFATLEHDLGDGWVTKLQ LDHKYNGYDAQMGSIQFDQPQPDGSAEINAQRYKGDTTSDSADLYVSGPFSLLGRDHDLVIGGSISKAHWKGKGYWDETFSVPNRVDYNNWHGNLPKPDW GPVSQRTDDVIRQTGVYLTTRLNVTDDLKFLLGGRVVNYSLTGLTPTYTESGRFIPYAGAIYDLNENFSVYASYTDVFMPQENFNRDRDNKLIEPDEGEN YEIGIKSEFFDGRLNASLAYFEVKETNRSVPDDAYNNQTPTPPNYAFKGSKATTKGYELEVSGELAPGWQVQGGYTHKVVRDDNDVKLSTFEPEDQLSLY TTYKLSGQLDKMTVGGGARWQNKAWQQIWNSPKGVNEDITQESYWVVDLMTRYQITQNLSATLNVNNIFDKYYYTNVGFYNSAIYGEPRNVMVTTRWDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site