Pseudomonas sp. MRSN12121, TO66_RS05810
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MRSN12121, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCTTCGAAGAAAATCTGCGAGAGCTTCGGGTCCTGGCTGCCCTGGGTCATGATCAGGCGGTGCAGGTTCAAGGATTCTTCGCTGTTGATCAGCAGGT GAAAGCCCCGTGCGATGTTCAGCAGCACGCTTTCGATCGGCTGGCCGGCCGGCAGCTCGAAGATCAGCGTCGGCAGCTGCTCCTCGCACTTGGCCATGAC CGCGGCGGAGAACAGCGTCTCCTTGTCGTTGAAGTGGCTGTACACCGTCAGCTTGGAAACACCGGCTTCGGCCGCCACCGCGTCCATGCTGGTGTTGGCG TAGCCATTGCTGAGGAACAGGTTTTTCGCGGCTTCGAGGATGGCCTGGCGTTTTGCCAGATCCTTGGGCCGACCCGGGCCGTTCGAGGTAGAAATATTGT CGGACATTCTTCGCTTTAATACTGGACTGGTGAGTTTGCTATTAATAACATACCCGCCAGTATAAATATTCGAAGCACCCTTAGCGAAAGGTCCCTCACC
|
|
| DNA Sequence for Gene |
>TO66_RS05810
ATGTTCCGCTATGCCTTGCCCCTCGCCCTGCCAGTCAGTCTGGCCATCCTGCTGTCCGCCTGCGGTCATGAAGAAGCCGCGCAAACCACCGTCCGCCCGG CCATGGTGGTACAGCCGGAGCCCGCGGCCCAGGCGATGGACAGCTATCCCGGCGAAGTCCGCGCGCGCTACGAGCCGGACCTGGCGTTCCGGATCGGCGG CAAGGTCAGCCGACGGCTGGTCGAGGAGGGGCAACGGGTGAAGGCCGACCAGCCCTTGGCCGAACTCGATCCGCAGGACGTGCGCCTGCAACTGGAAGCC ACCCGGGCGCAGGTGGCGGCGGCCGAGGCCAACCTGAACCTGGTGCGGGCCGAGCGCGACCGCTACAAGACCCTGATGGACCGGCAGATGGTCAGCCGTT CCCAGTACGACAACGCGGAAAACCTGTACCGCTCGGGCGAGGCCCGGCTCAAGCAGATCAAGGCCGAATTCGACGTGGCCAGCAACCAGGCCGGCTATGC CGTGCTGCGAGCGCCCAAGGATGGCGTCATCGCTCGGCGCACGGTCGAGGTCGGCCAGGTGGTCGCCGCCGGCCAGACGGTCTTCACCCTGGCCACCGAT GGCGAGCGTGAAGTGCTGATCAGCCTGCCGGAGCAGGGTTTCGGCCGTTTCCGCATTGGCCAGCCGGTGTCGGTGGAACTGTGGAGCCAGCCCGACCAGC GCTTTGCCGGGCAGATCCGCGAGTTGTCGCCGGCCGCCGATCCGCGTTCCCGGACCTTCGCCGCCCGTATCGCCTTCACCGCCGGCAAGGTGCCGGCCGA GCTGGGGCAAAGCGCCCGGGTCTTTATCCAGGCCGCGGCCAGCGTGCCGCTCTCGGTTCCGCTGTCGGCGGTGACCGCGGAAAACGGTGCCGCCTATGTC TGGCGGGTGGATGCCGGCAATACCCTGAAAAAGACCCCGGTGCGCCTCGGTGCCTTCGGCGAGAAGAGCGTGCCGGTGCTCGAGGGCCTTGGCGTCAGCG ACTGGGTAGTGGCGGCCGGCGTGCATGTGCTCCATGAGGGGCAGCAGGTGCGTCCGGTGGATCGCTCCAACCGCGTGGTCAATCTGGCGGCCAAGGAGTA A
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCCCCGATGGGTTTCAATCTTTCCGCATGGGCATTGCGCAACCGCCAGATCGTGTTGTTCCTGATGCTGTTGCTGGCGGTGGTCGGGGCGTTGTCCTACA CCAAGCTGGGGCAGAGCGAGGACCCGCCTTTCACCTTCAAGGCCATGGTGATCCGCACCAACTGGCCGGGCGCCACGGCGCAGGAGGTGTCCCGGCAGGT GACCGAGCGCATCGAAAAGAAGCTGATGGAAACCGGCGAGTACGAGCGGATCGTCTCGTTCTCCCGCCCGGGCGAGTCCCAGGTGACCTTCATGGCCCGC GACTCGATGCATTCGGCGCAGATCCCCGAGCTCTGGTACCAGGTGCGCAAGAAGATCAGCGACATCCGCCAAACGCTGCCGCCGGGAATCCAGGGGCCCT TCTTCAACGATGAGTTCGGCACCACCTTCGGCAATATCTACGCGTTGACCGGCGAGGGGTTCGATTACGCGGTGCTCAAGGACTACGCCGACCGGATCCA
|
|
| Amino Acid Sequence |
>RND transporter
MFRYALPLALPVSLAILLSACGHEEAAQTTVRPAMVVQPEPAAQAMDSYPGEVRARYEPDLAFRIGGKVSRRLVEEGQRVKADQPLAELDPQDVRLQLEA TRAQVAAAEANLNLVRAERDRYKTLMDRQMVSRSQYDNAENLYRSGEARLKQIKAEFDVASNQAGYAVLRAPKDGVIARRTVEVGQVVAAGQTVFTLATD GEREVLISLPEQGFGRFRIGQPVSVELWSQPDQRFAGQIRELSPAADPRSRTFAARIAFTAGKVPAELGQSARVFIQAAASVPLSVPLSAVTAENGAAYV WRVDAGNTLKKTPVRLGAFGEKSVPVLEGLGVSDWVVAAGVHVLHEGQQVRPVDRSNRVVNLAAKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|