Pseudomonas sp. MRSN12121, TO66_RS05275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MRSN12121, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACGAATCGGCCAAGCGCCTGAGCGACCTGATCGAAGAACAGCGCGCCAGCGGAATAGACCCTTCGCGGATTTTCCTCGCCGGTTTTTCCCAGGGCGGCGC GGTGGTGCTGCACACCGCCTTCGTCAAATGGCAAGGGGCGCTGGGCGGCGTGCTGGCCCTCTCCACCTATGCCCCGACCTTCAGCGAGGAACTCGAACTG TCGGCCAGCCAGCAGCGGATTCCGACCCTGTGCCTGCATGGGCAGTACGACGAAGTGGTACAGAACGCCATGGGCCGCACCGCCTACGAGTACCTGAAAC ACCATGGTGTCACCGTGACATGGCAGGAATACCCAATGGGGCATGAAGTGTTACCCGAGGAAATTCGCGATATCGGCGCCTGGCTCGGCGAGCGTTTGCG CTGAAATCGACAACTTGCGTAGCCCGTTGAGCAAGCCACTACGCCGCGCCCGTTTCTTGCATTACACTGCCCGGCGTACATTCCTTAACCAATTGATGAG
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| DNA Sequence for Gene |
>TO66_RS05275
ATGACCGTGCTCAAAGCACTCAAGAAAATCTTCGGTAAAAGCGAGGCTGAGCAGCTCGCGCCAGGCCCCAGCCCTTCTTCCTCCAGTCCCAGCAGCCGCA CCGACGGCCATCAGCCGGAACGGACCGCGCCTGCCACCGCCCCCCGGAAAGAACCGACGCCCCCTGCCGCCCCGGCCACGCAGAGCGCCCCGCGCGGCGA CAAGCCCAAGGCCGAGCAGCCGCGCCGCCCGCGCGCGCCGAAGCCGCCGGTGAGCACCTGGAAACTGGAAGATTTCGTCGTCGACCCCCAGGAAGGCAAG ACCCGCTTCCATGACTTCAAGCTCGCCCCGGAGCTGATGCACGCGATCCACGACCTGGGTTTCCCCTACTGCACGCCGATCCAGGCGCAGGTCCTGGGCT TCACCCTGGCCGGCAAAGACGCCATCGGCCGCGCCCAGACCGGTACCGGCAAGACCGCCGCGTTTCTGATCTCGATCATCACCCAGCTGCTGCAGACCCC GCCGCCGAAAGAGCGCTACATGGGCGAGCCGCGGGCGCTGATCATTGCCCCGACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCCGCGGCGCTGACC AAATACACCGGCCTCAACGTGATGACCTTTGTCGGCGGCATGGACTTCGACAAGCAGCTCAAGCAGCTCGAAGCCCGCCATTGCGACATCCTGGTCGCCA CGCCAGGCCGCCTGCTGGACTTCAACCAGCGCGGCGACGTGCACCTGGACATGGTCGAAGTGATGGTGCTGGACGAAGCCGACCGCATGCTCGACATGGG TTTCATCCCACAAGTACGCCAGATCATTCGCCAGACCCCGCCGAAAAGCGAACGCCAGACCCTTCTGTTCTCCGCCACCTTCACCGACGACGTGATGAAC CTGGCCAAGCAGTGGACCACCGACCCGGCCATCGTCGAGATCGAAGCCGAGAACGTGGCCAACGCCAACGTCGAACAGCACATCTATGCGGTGGCCAGCG CCGACAAGTACAAGCTGCTGTACAACCTGGTCAACGACAACGGCTGGGAACGGGTGATGGTCTTCGCCAACCGCAAGGATGAGGTGCGGCGCATCGAGGA ACGCCTGGTGCGCGATGGCGTGAACGCCGCCCAGCTGTCCGGCGACGTGCCTCAGCACAAGCGCATCAAGACCCTGGAAGGTTTCCGCGAAGGCAAGATT CGCGTGCTGGTGGCCACCGATGTCGCCGGTCGCGGCATCCACATCGACGGCATCAGCCACGTGATCAACTTCACCCTGCCGGAAGTGCCGGACGACTACG TGCACCGGATCGGTCGTACCGGCCGGGCGGGCGCCGATGGCGTGTCCATCAGCTTCGCCGGCGAGGATGACTCCTATCAGCTGCCGTCGATCGAAGCGCT GCTGGGGCGCAAGATCAGTTGCGAGATGCCGCCGACCGAGCTGTTGCGCCCCGTGGAGCGCAAGCGCCCGAAGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGCGGCGTTGTAGGAGCGAAGCTTGCTCGCGATGAACGATAACGCACAGTGTCAGGCATGACGCCTCGCGGGCAAGCCTCACTCCTACGGATACAAGC CCGTCCATAAAAACGCAGCCCGACCACAGGCTGCGTTTTTTTTCGCCTGGATATTGCCCACCAAAACTAAAAGTCCATAATGGACAAATTAGTTTATTTC CTGAGGGTTCCCGCATGTCCAGCACGCCTTCCGTGATGACCCAGGCTCAAGCCCGCGAATTGCTGGCCCAGGTCGATGTGCCGCAAGTCCTGCGCAAGCT GTTCCACGACCTGGCCGCCGGGCTCGCCGTGCAACCGGCGCAGCAGCTGGTGGAGTTTCCCCAGGGTGCCGGGGATTTCATCAACTACCTGGGCGTGCTG GCCGAAGAACGGGTCTACGGGGTCAAGACCTCGCCCTACATCGTCCGCGCGCAAGGCCCGCTGGTGACTGCCTGGACCCTGCTGATGTCCATGGACAGCG
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MTVLKALKKIFGKSEAEQLAPGPSPSSSSPSSRTDGHQPERTAPATAPRKEPTPPAAPATQSAPRGDKPKAEQPRRPRAPKPPVSTWKLEDFVVDPQEGK TRFHDFKLAPELMHAIHDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT KYTGLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMN LAKQWTTDPAIVEIEAENVANANVEQHIYAVASADKYKLLYNLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKI RVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEALLGRKISCEMPPTELLRPVERKRPKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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