Pseudomonas sp. MRSN12121, TO66_RS00335

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006783 heme biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01040
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008495 protoheme IX farnesyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psem01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psem00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psem00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psem01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd13957 PT_UbiA_Cox10 IPR006369 Protohaem IX farnesyltransferase 18 288 2.42713E-99
Gene3D G3DSA:1.10.357.140 UbiA prenyltransferase IPR044878 UbiA prenyltransferase superfamily 20 176 8.0E-35
Pfam PF01040 UbiA prenyltransferase family IPR000537 UbiA prenyltransferase family 30 275 1.0E-64
FunFam G3DSA:1.10.357.140:FF:000001 Protoheme IX farnesyltransferase - - 21 175 8.1E-55
PANTHER PTHR43448 PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL IPR006369 Protohaem IX farnesyltransferase 9 292 5.6E-84
NCBIfam TIGR01473 JCVI: heme o synthase IPR006369 Protohaem IX farnesyltransferase 15 293 2.1E-104
Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. IPR006369 Protohaem IX farnesyltransferase 13 294 19.998558

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.