Pseudomonas sp. ML96, IP89_RS22525

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. ML96 ML96_Contig_46, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCTTCACCCGCGCCGGCGTGCAGCCGCCACAGGCCAGCCATGCAGACGTGGCCGCCTGGCAGCAGGGCAGCCTGATCGCCATCGACCGCCCACTGGGCGA GCTCATCGACGAACTGGCGCGCTACCGCAGCGGCTGGCTGCGCTGCGACCCCGCCATCGCCAGCGTGAAGGTCTCCGGCGCCTTCCCGCTGGACGATACG GATCGCGCGCTGGACGCCCTGGAGAAGGGCTTCCCCATCCGCGTCGTACGCCGCACGCGCTACTGGGTGAGCCTGCTGCCGCGCACCTGACGGGCTCGCC CTGCAGTACGCACAACGCTCCACGCAGAAAATTTTCCGATGCCTTGCACTTTTGCCACCCCTGGTTCGGCTCTCGCTGCATCAGTGGCCCGCTTGGCCAC CCAAACTGGGGGAGTCACCATGTCGTATCCATTCATCCGCCACCGCCTGGCGCGCCATCTACAGGCCGCGCTGCTCGGCGTGGGCGCCATCGGTGCGCCG
DNA Sequence for Gene
>IP89_RS22525
CTGCTGCAGGCCGCCGAACCCACCTCGACCAGCGCTGCGGTCGAACAGGTCCGCCAATACGCCATCGCCCCGGGCCCGCTCAGCGAAGTGCTCGGGCGCT TCGCCGCCGCCTCCGGCATCGCCCTGTCGTTCGACGCGGCGCAACTCGGCAACCGCCAGTCTGAAGGCCTGAGCGGCAGCTACTCGGTCGATGCCGGCTT CGCCAGGCTGCTACAAGGCAGCGGCCTGCGCGCGGTCAATGACGGCGGCAGCTATGTCCTGGAACAGCAGACCGATGACTCGATGGCGCTCGGCACCACG GAGATCAACGCCAGCGAGCTGGGCAGCACCACCGAAGGCACCGGCTCCTACACCACCGGCGCGGTGACCATCGGCAAGGGTACTCACACGCTCAAGGAAA TCCCCCAGTCGGTCAGCGTGATCACCCGCCAGCAGCTGGATGATCAGGATCTGGTCGACCTCAAGGACGCGGTCAATCACACCACCGGCATCGTCGGTCT GCAGGGGGTCGGCAAGGGCATGATCCTGTCCTCGCGCGGCTTCCAGATCGATGACTGGCAGTACGACGGCGTTCCGATCCCCCGCAACATGTATGCGCTG GGCAACTGGGCGACCCAGGACCTGATCTTCTTTGATCGCCTGGAAGTGCTGCGCGGCGCGTCCGGCCTGTTGCAGGGCACCGGCAGCCCGGGCGGCGCCG TCAACATGGTGCGCAAACGCGGCCAAGATGCGCCCAAGGTAACCGTGACTGGCAAGGCCGGCTCGTGGGATCACTACGGCCTGCAAGTGGACGCGGGTGG CCCGCTCAACGAGGCCGGCACGATCCGTGGACGGGTCGTTGCCGATGAAGACCAGAGCAAGTCCTTCATCGACTACGAATGGAGCAAGACCCACTCGCTG TACGGTGCACTGGACATCGACCTACGCGAGGACACCACCCTGGGCCTGGCCATCAGCCGCTCGGACGGCGAATCGCGCCCAAGCATCCGCGGCCTGCCAC GCTACGCCGACGGCTCGATGCCGGATATCTCGCGCTCGACCTATGGCGGCGCACGCTGGAACCACTCGGACATCGATGTCACCACCGTCTACGCCGACCT CGAACACCGCTTCAATGATGACTGGGCGTTCAAGGTCGGTGCCCTACGCATGACCGAGGAAAACACCTCGAAACAGCAACGGCTGTCGACGGTCGGCGCC GGGCTCGCGGCAGATGGTAGCGGTGCCGAGTACGACGATTTCGTGACCGACTTCGATTCGACCAAGCTCGGCCTCGACATGAACCTCACCGGCAAATTCG AAGCCTTGTCGATGCAGCAGGAAGTCACCCTGGGCGGCAATTACTCCAAGATGACCACCGATGATCGCTACGCGCGCACCTTCAACGCCACCAGCGACAC CATCTTCGACATCGACCACAACCGCCCGGAAATCAGCTACGAAGGCCTGCTCAACACCGCCGGCGGGCGGGGCTACATGAGTGAGTACGATGTCCGGCAG AAAGGCCTGTACGGCAGCTGGCGGATCAAGCCGGTAGACGACCTGACCCTGGTGCTGGGCTCGCGTGTCAGCTGGTATGACTACAGCTACGAATCGAGAA ACCAGTTCGCCTTCAGCAACGTCGTCAACGTCAGTGAGCCAAGCACCTCGAACGAAACCGGGGAGTTCACACCCTATGCCGGTATCGTCTACGACCTGAG CCGCGAGTGGGCGGTGTACGCCAGCTACACCGACGTGTTCGAACCGCAGACGGTGCGCGATGCCGGCGGTTCGATGCTCAAGCCGGTGATTGGTAGCAAC TACGAGATCGGCCTCAAGGGTGAGCTGCTCGACGGGCGGGTCAACACCTCCCTGGCGGTCTTCCGCTACGACCAGGAAAACCGCTCGGTAAACGACCTGG CCGCCGGCTTCGCCTGTGACGGCTGGTACTGCTCGAAGGCAGCGGGTGAAGTACGTAGCCAGGGTATCGAAGCAGAAATCAGCGGCGAGGTCGTCGACAA CCTGCAGCTGTTTGCCGGCTACACCTACAACACCACCAAGTACCTGGAAGACCCGACCAACGAAGGCAGCGTGTTCAGCACCTGGACGCCAAAACACATG CTGCGCGTGTGGGGCAACTACCAGTTCAGCGGCGACCTGAACCGTCTCAGCACAGGCCTCGGCTTCACCACCCAGAGCCACACACTGGGTTACGAGCGGA CCTATGAGGTTGCGGGTTACACCGTGTGGAGTGCCCGGGTCGGCTACCAGCTGACACCGGAAATCGGCCTGGCGCTGAATGCCAACAACCTGTTCGACAA GAAGTACATTGCCGCCGGTTACAACCAGCTCGATGGCAACAACAACTTCGGCGAGCCGCGCAACCTGATGTTCAGCGTCAAGTACACGCCAGAGTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACGGCATCAGCCGCCCAGCCATGGAAGGCTTACACAGGTAAAGACGGACGAACGCGGCGAAAACCGCAGCATCTTTACGATCTTTACCCGTGCTCACCCT GCAGCTCGCGGCGCAGCCAGTCGGCCAGGCGCTCGGCGCGGCGTTCGCCACGTCGGCTCGGCACCCACAGGGCCAGGCGGGCGTCGGTTTCGACAAAGCC CCAGGGCGCGACCAGGCGGCCAGCGGCGAGGTCGTCCGCCACCAGCGGTTGCGGCGCGATGGCCACGCCGAGGCCGCTGGCGGCGGCTTCCAGCAGGTAG TAGAGGTGCTCGAAGCCCTGGCCACGCTGCAACCGCTGCGCCTCCAGGCCCTGGGCCTCGGCCCATTGTGGCCAGGCCTGCGGGCGCGAGGCAGTGTGCA GCAGCGGCTCGCCGAGTAGCGCGGCGGGCGGTTGGCCGGCCAGCTCGGCACTGCGCGCATAACGCGGGCTGAGCACAGGGCCGATGCGCTCCACGCCCAG
Amino Acid Sequence
>ligand-gated channel protein
MLQAAEPTSTSAAVEQVRQYAIAPGPLSEVLGRFAAASGIALSFDAAQLGNRQSEGLSGSYSVDAGFARLLQGSGLRAVNDGGSYVLEQQTDDSMALGTT EINASELGSTTEGTGSYTTGAVTIGKGTHTLKEIPQSVSVITRQQLDDQDLVDLKDAVNHTTGIVGLQGVGKGMILSSRGFQIDDWQYDGVPIPRNMYAL GNWATQDLIFFDRLEVLRGASGLLQGTGSPGGAVNMVRKRGQDAPKVTVTGKAGSWDHYGLQVDAGGPLNEAGTIRGRVVADEDQSKSFIDYEWSKTHSL YGALDIDLREDTTLGLAISRSDGESRPSIRGLPRYADGSMPDISRSTYGGARWNHSDIDVTTVYADLEHRFNDDWAFKVGALRMTEENTSKQQRLSTVGA GLAADGSGAEYDDFVTDFDSTKLGLDMNLTGKFEALSMQQEVTLGGNYSKMTTDDRYARTFNATSDTIFDIDHNRPEISYEGLLNTAGGRGYMSEYDVRQ KGLYGSWRIKPVDDLTLVLGSRVSWYDYSYESRNQFAFSNVVNVSEPSTSNETGEFTPYAGIVYDLSREWAVYASYTDVFEPQTVRDAGGSMLKPVIGSN YEIGLKGELLDGRVNTSLAVFRYDQENRSVNDLAAGFACDGWYCSKAAGEVRSQGIEAEISGEVVDNLQLFAGYTYNTTKYLEDPTNEGSVFSTWTPKHM LRVWGNYQFSGDLNRLSTGLGFTTQSHTLGYERTYEVAGYTVWSARVGYQLTPEIGLALNANNLFDKKYIAAGYNQLDGNNNFGEPRNLMFSVKYTPEF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site