Pseudomonas sp. ML96, IP89_RS22310
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. ML96 ML96_Contig_46, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGGGCGGCTGGGTCAGCTCCAACTACGCGGCGGTGGCCTGCGTCGATCTACCGACCTGCCACGGCGAGTGGTGGCCGGCGATGGACTTCGCCAACGGC TTCCACCTGACCCAGCATATCGGCCCCAACTACCTCGGCGGCCAGCTCGACAGCGACGCGCGCACCGCTATCCATATGACCCACAGGCTGGGCGCCGTGG TACTCAGCCTGGTTCTGCTACTGCTGGCCTGGCGCCTGCGTGCCGCCGGTCTCGGCCGCCTGGCCGGCCTGTTGCTGCTGGCCCTGGCCGTGCAGGTCAG CCTGGGCGTGAGCAATGTGCTGCTGCACCTGCCGCTAGCGGTGGCGGTGGCGCACAACGCCGGTGGCGCCACGCTGCTGCTGGTACTGGTCCTGATCAAC TATCGCCTGCGCCGTGTCACGAGCTCTGCTCGCGCGGCGCGTGCGGCGACCGTCGCCAGCGTCCTGGCGCCGGTTGGCAAATAAGCAGAGGAGATACGCC
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| DNA Sequence for Gene |
>IP89_RS22310
ATGGCTACTGCGCTGCGAGCCCACTCCGAATCCGCCAGCTGGCGCGACTACCTGGAGCTGACCAAGCCCCGGGTGGTGCTGCTGATGCTGATCACCTCGC TGGTCGGCATGTTCCTCGCCACCCGCGCCGGCGTGCCCTGGACCGTGCTGGTGTTCGGCAACCTCGGCATCGGCCTGTGCGCCGGTGCGGCGGCGGCGGT CAACCATGTGGTCGACCGGCGTATCGACTCGATCATGGCGCGTACCCACAAGCGCCCGGTCACCACCGGGCGTGTCTCGGTGCCGGCGGCGCTGGGCTTC GCCCTGCTGCTGGCGGTGGCCGGCCAGGCGCTGTTGCTGGCCTTCACCAACGAGCTGACCGCCTGGCTGACCCTGGCCTCGCTGCTCGGCTATGCAGTGC TCTACACCGGCTTCCTCAAGCGCGCCACGCCGCAGAACATCGTGATCGGCGGCCTGGCCGGCGCCGCGCCGCCACTGCTCGGCTGGGTCGCCACTACCGG GCACCTGAGCGCCGAGCCGCTGCTGCTGGTGCTGATTATCTTCGCCTGGACCCCGCCGCATTTCTGGGCCCTGGCCATCCACCGCAAGGAGGAGTACGCC AAGGCCGACATTCCGATGCTGCCGGTGACCCACGGTGAGCACTACACCAAGGTACACATCCTGCTGTACACCGCGGTGATGCTCGCGGTGACCCTGCTGC CCTATGCCATCCACATGAGTGGGCCGCTCTACCTCGCCGCCGCGCTGGTGCTTGGCGGGCGCTTCATGTTCTGGGCTGTGGTGCTGTACCGTGACAGCCG ACCGCACGCGGCGATCAACACCTTCAAGTACAGTATCTGGTACCTGTTCCTGCTGTTCATCGCCTTGCTGGCAGACCATTACCTGCTGCTCAACCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGCAGCCCTCGATAGCGGCGAACGACCAGCTCGTCCGCCGAGCCGAAGAGAGATTTCATGAGCCGTACCCAGAAGACCGTTATCGTCCTCGCCGCCGT CGTCGCCCTGATTCTGGGCCTTACCGTCAACAAGGTGCTGAACAGCAAGGGCGATGGCACCGACAAGGTGGCCCTGCTCGACGCCGGTATCGTCCTGCTG CCGCAGAGCCGCACCCTGCCGGGCCTGGCGCTGACCGACCAGGATGGCAAACCGGTGCAACTGGACCAGCTCAAGGACAAGTGGAGCCTGCTGTTCTTCG GCTACACCTTCTGCCCGGACATCTGCCCGGCCACCCTGGCGCAGCTGCGCCAGCTGCAGGGCATGCTGCCGGCCGAGGCCAAGGACAAGCTGAGCGTGGT GCTGGTGACGGTCGACCCGCACCGCGACACCCCCGAGCAGCTGAAGAAATACCTGGGCTTCTTCGATCCCGGCTTCCAGGGCCTGACCGGTAGCCAGGAA
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| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MATALRAHSESASWRDYLELTKPRVVLLMLITSLVGMFLATRAGVPWTVLVFGNLGIGLCAGAAAAVNHVVDRRIDSIMARTHKRPVTTGRVSVPAALGF ALLLAVAGQALLLAFTNELTAWLTLASLLGYAVLYTGFLKRATPQNIVIGGLAGAAPPLLGWVATTGHLSAEPLLLVLIIFAWTPPHFWALAIHRKEEYA KADIPMLPVTHGEHYTKVHILLYTAVMLAVTLLPYAIHMSGPLYLAAALVLGGRFMFWAVVLYRDSRPHAAINTFKYSIWYLFLLFIALLADHYLLLNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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