Pseudomonas sp. ML96, IP89_RS20725

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. ML96 ML96_Contig_45, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGAAGGCCTGGCCGAGTACTACGCCATCGAACTGATGCGCCGTGCCGGCGGCATGAGCGAGGACCGCTACCAGGCCATCCGCAAGAAGCTGGTGAACTG GAGCAAGAAGGTCGGCAGCCTGCGCACCGAGAACTCCACCGGCCCGGTGACGGCGCGTGCGGTGCTGCTGTTGCAGGAGCTGGATCGCGAGATCCGCAAG AACACCGACAACCAGCGCTCGCTGGACGACGTCACCCGCGGCCTGATGCGCCTGGACAAGGCCAGCACTAAGGACTTCATCGAGATCAGCGAGAACGTCA TGGGGCGCGGATCGGAAGTGCTCGACAGCAAACTGCTGCGTTGAATGGTGGCGCCTTGACAGGCGCCCTTCATTTAATTTCAAATGACATGCATTCTCAT TTGGTGCTTGTCATCTCCTGAACCCGTACGGTCAGGCCTGCACCTGCCGTCGGAGTATTTGTGCGGGTATCGCGGGTCTTAAAGTTGTTGGAGCGCTGCG
DNA Sequence for Gene
>IP89_RS20725
GTGGATGATCCGATCCGCCGTGGCATTTCCACGGCCTATTCCTCCTTCCATGGCGAGCTGGTGAAGTTCTTCGGCAAGCGCCTGGACAACACCAGCGATG CTGCCGACCTGGCGCAGGACGCCTTCACCCAGTGGCTCGATCGCGGCCGCGACAGCGATGTCCGCCAGCCACGTGCCTTTCTCTTCCAGATCGCCCGTAA TCTGTTACGTGACCACTGGCGTCGCCAGCGTAGCCGCCCCCTGTCCGTCGAGTCGGAGAGCGAGTCGATGATCGAGCTGAAAGCCCCCGGCGGCCCTCAG GAGGTGGTAGAGCAACAACAGCGATTGCATTTGCTGGCTCAGGCACTGGATGATCTGCCGCCACGCCGGCGCGAGGCTTTCGTGCTGCACCGCTTCGATG GCCTTTCCCAGGCCGAAGTGGCGCAGCAGATGGGCATTTCGCTGAGCATGGTGGAGAAGCATGTGGCCAGTGCCTTGCTGCATTGCAAGCGGAGGCTGGA TGCCGAGATGGTGGCGGGGGGAGAGGAACGATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCATGGATTCCAAGTGGCTGGCCGAGGAGCAGGCCGCCCAGTGGCTCAGTCGGCGTTCCAGTGCGTGTTTCTCGGCTGCAGATGAACAGCAGTTTCAGGA CTGGCTGGGTGCCGCTGCACAAAACTCAGAGGCTTTCGCAGCGCTACAGCAAATCTGGGCCGACTTCAGCCAGGTACCGCGCCCCGTGCTGGCACCAGTG CGCGCCGCGCCACCTCGTCGCCACTGGCTGCGCCATGCTGCCGCGGCCGCCTGTATCGTCGCCGGGCTGCTGTTCGTGCAGAGCGATTTTTCGCCGCAGG TGGCGACAGAGCAAAGCTTCTCGAGCAGCCCGCAGGCCGTAAGTGAGGTCGAACTGGCGGATGGCAGTCGGGTCATGCTCAATCTCGATTCACGTATCCA GGTGCGCTATTTCGAAGACCGCCGCGAGGTCGTGTTGGAGCAGGGTGCGGCCTTCTTCTCGGTAGCTCACGATGCCAGCCGCCCATTCACGGTGCATGCG
Amino Acid Sequence
>RNA polymerase sigma factor
MDDPIRRGISTAYSSFHGELVKFFGKRLDNTSDAADLAQDAFTQWLDRGRDSDVRQPRAFLFQIARNLLRDHWRRQRSRPLSVESESESMIELKAPGGPQ EVVEQQQRLHLLAQALDDLPPRRREAFVLHRFDGLSQAEVAQQMGISLSMVEKHVASALLHCKRRLDAEMVAGGEER
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site