Pseudomonas sp. ML96, IP89_RS18900
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. ML96 ML96_Contig_38, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGAGTGGGCCCGGTTCCAGCTGTGCGCAAGCTACTGGAGCGCTTGAGCTTGGATATCTTGGACTTTGATGTGATCGAGCTGAATGAGGCTTTTGCCGC TCAGGCTCTGGCAGTCACCCGGGAATTGGGGATCGCCGATGACGATGCTCGAATCAACCCGAACGGTGGTGCCATTGCTCTCGGCCACCCGCTAGGAATG AGTGGTAACCGCCTGGTGCTGACCGCTATACACCACCTTGAGAAAACGGGTGGCCAATATGGTTTGGCAACCATGTGTGTTGGGGTCGGCCAGGGTCTAG CCCTGGCAGTCGAGCGGGTCTGATCATCGCCCGGGCTGAGCGCACTGCGCTTGGCTCGGGACGCTTGCAACAGCGGATTTACATACTGGCATCTGGGGCT CGGAAACCTAATCAGCATGTGAGTCCGCTGTTGCAAGCGCTGGCTCGTGAAGGGCGACTGCGATACAACGACTTACCTTCCAGAATATCGGAGCACCGGC
|
|
| DNA Sequence for Gene |
>IP89_RS18900
TTGAACAGCCCAAGCAACCAACTCTTCGATGCCTACTTCACTCAGGCGAACATGCGAGCAGTTTTCTGCGATCGCGGCCGGGTGCAGGGCATGCTGGACT TTGAGCTAGCGCTGGCCCGTGCGGAGGCCCGGGTCGGCTTGATTCCATCAGAAGCCGTAGCACCGATCGCCGCGGCTTGCATCGCAGAAAACTATGACTT TGACGCGCTGGCTCAGGCGATTGTCAGCGCCGGCAACTCAGCGATACCTCTGGTTAAAGCACTAGGCCAGCAGGTGGCAGCGCAGAGCACAGAGGCAGAG CGTTTTGTGCATCTCGGCGCTACCAGTCAGGATGTGATGGACACGGGGTTGGTGCTGCAGTTGCGCAATGCGATAGCGCTGCTGGAAACCGATCTGGCCT CATTGGCGGATGCACTGGCATTACAAGCTGAACGTTACGCTGAAACGCCCCTGGCTGGGCGGACTTGGCTGCAGCATGCGACGCCAGTGACCCTGGGAAT GAAGTTGGCGGGAGTGCTCGGGGCAGTGTCGCGTCATCGTCAGCGCCTGATCGAGCTGAAGCCACGTCTGCTGTGCCTGCAGTTTGGTGGTGCCTCCGGC AGCCTGGCTGCATTGGGTGATATGGCTTGGCCGGTGAGCGAAGCGCTTGCCTTGGAACTGAAGCTACAGCTACCTGAGCAGCCTTGGCATACGCAGCGGG ATCGTCTGGTCGAGCTCGGCGGCTTGCTCGGGTTGATTGCCGGAAGCCTGGGCAAACTAGGTCGCGATATCAGCCTGCTGATGCAGACAGAAACCGGTGA AGTCTTCGAGCCCTCAGCTCCTGGTAAAGGCGGTTCCTCCACCATGCCTCACAAGCGCAACCCTGTGAGCGCTGCCGTCCTGATTAGTGCCGCTACGCGA GCCCCTGGTCTGGTATCGACCATGCTGGCAGCCATGCCTCAAGAGCATGAGCGAAGCCTTGGTCTTTGGCATGCAGAATGGGAAACCCTGCCAGAGCTCT GCTGCTTGGTTTCCGGAGCCCTGCAGCAGGCCCTGTTGGTTGTGCCAAGCATAGAGGTCGATGCTGAGCGCATGAGGGAGAACCTCAATCTGACGCAGGG CCTTGTGCTGGCTGAGGCGGTAAGCATCGCACTGGCGCAGCGCATTGGTCGCGATGCCTCCCATCACCTGGTAGAGCAATGCTGCCGCCAGGCGGTGAAG GAGGGCGTCCATCTACGAGTCGTTCTGGATAGCAACGCTGAAGTCAGTGCGCAGCTTTCCAGTGCTGAGCTAGATCGTCTGCTCGACCCCGCACACTACC TCGGACAGGCGCGACGCTGGGTCGAACGCGCCATTGCCGATCATTCGAACATCTCGCGCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GAGCTTTGCATGCCTGCCGTACAACTCGCCGGTGGCGAACTGAATTACGCGCTGGAGGGCCCAGCGGGGGCGCCGGTACTGGTGCTGTCCAATTCCCTCG GGACCGATCTGCAAATGTGGGATGCGCAGATACCGGCTTTTACCCAGCACTTCCAGGTGTTGCGCTACGACACTCGGGGTCATGGGAAGTCCTCGGTCAG TGACGGCCCCTATAGCATCGAGCAATTGGGCGGCGACGTGCTGGCATTACTGGACGCACTTAGTATCACCAAAGCTAGTTTCTGTGGCTTGTCCATGGGA GGCCTGATCGGCCAGTGGCTCGCGATCAACGCTCCTGAACGCATCGAGAATCTGGTGCTGTGCAACACCGCGGCAAAAATCGGCACTCCCGAGATTTGGA ATCCGCGCATCGACATGGTTATGTCCGGTGGAGCACAGGCCATGCGTGACCTGCGGAATGCCTCCATCTCGCGCTGGTTCACTGCAGATTTTGCTGAAGC
|
|
| Amino Acid Sequence |
>3-carboxy-cis,cis-muconate cycloisomerase
MNSPSNQLFDAYFTQANMRAVFCDRGRVQGMLDFELALARAEARVGLIPSEAVAPIAAACIAENYDFDALAQAIVSAGNSAIPLVKALGQQVAAQSTEAE RFVHLGATSQDVMDTGLVLQLRNAIALLETDLASLADALALQAERYAETPLAGRTWLQHATPVTLGMKLAGVLGAVSRHRQRLIELKPRLLCLQFGGASG SLAALGDMAWPVSEALALELKLQLPEQPWHTQRDRLVELGGLLGLIAGSLGKLGRDISLLMQTETGEVFEPSAPGKGGSSTMPHKRNPVSAAVLISAATR APGLVSTMLAAMPQEHERSLGLWHAEWETLPELCCLVSGALQQALLVVPSIEVDAERMRENLNLTQGLVLAEAVSIALAQRIGRDASHHLVEQCCRQAVK EGVHLRVVLDSNAEVSAQLSSAELDRLLDPAHYLGQARRWVERAIADHSNISR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|