Pseudomonas sp. ML96, IP89_RS17755

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00088
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd16916 HATPase_CheA-like - - 2102 2277 6.37198E-80
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 10 108 7.9E-8
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 962 1060 1.9E-11
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1955 2094 1.2E-10
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1291 1424 5.3E-29
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 2449 2566 8.11E-36
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 959 1081 6.8E-19
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1784 1888 2.05352E-10
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1293 1384 9.4E-15
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 962 1050 5.59034E-6
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 1911 2565 0.0
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 7 130 1.7E-22
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 2264 2277 1.8E-9
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 2096 2277 2.62E-35
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 787 908 5.44E-27
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1636 1733 1.7E-5
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 2143 2279 2.1E-13
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 2285 2417 1.2E-22
MobiDBLite mobidb-lite consensus disorder prediction - - 1600 1625 -
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1099 1221 1.47E-14
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 433 555 8.83E-14
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 14 136 3.5E-11
Coils Coil Coil - - 1873 1893 -
Coils Coil Coil - - 1993 2013 -
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 2450 2561 1.7E-27
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 789 879 3.7E-13
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1630 1761 1.1E-26
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1785 1889 8.9E-20
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 2448 2561 7.8E-36
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 2095 2279 1.8E-60
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 2139 2280 1.4E-22
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1100 1228 4.6E-12
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1291 1388 9.8E-5
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 2184 2198 1.8E-9
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 2279 2412 8.76E-24
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 2354 2414 7.3E-20
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1784 1906 1.3E-23
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1783 1884 4.3E-4
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 787 884 8.5E-10
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 961 1099 2.1E-17
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1291 1413 5.36E-28
Gene3D G3DSA:3.40.50.2300 - - - 2450 2570 2.0E-39
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1636 1756 3.66E-25
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 2240 2258 1.8E-9
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 958 1062 0.32
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 787 917 2.1E-28
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1636 1734 3.3377E-13
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1291 1389 7.97174E-14
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 787 885 6.29191E-9
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1785 1884 8.2E-14
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1638 1730 2.3E-14
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 2093 2279 1.6E-51
MobiDBLite mobidb-lite consensus disorder prediction - - 1507 1527 -
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 2450 2559 2.02884E-30
SMART SM00260 chew_2 IPR002545 CheW-like domain 2272 2416 1.2E-34
MobiDBLite mobidb-lite consensus disorder prediction - - 1604 1618 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.