Pseudomonas sp. ML96, IP89_RS15430

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001604
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001604
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00532
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 709 783 5.9E-11
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 468 487 32.0
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 710 784 4.86E-17
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 332 408 7.2E-34
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 14 609 0.0
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 1 619 0.0
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 534 553 120.0
CDD cd17748 BRCT_DNA_ligase_like - - 712 782 1.14727E-23
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 327 400 1.3E-32
FunFam G3DSA:1.10.150.20:FF:000006 DNA ligase - - 528 605 6.9E-23
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 615 700 3.71E-13
Gene3D G3DSA:1.10.150.20 - - - 452 526 3.3E-25
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 6 470 0.0
SMART SM00292 BRCT_7 IPR001357 BRCT domain 709 786 1.2E-10
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 68 325 1.1E-104
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 452 527 5.0E-27
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 532 595 9.8E-18
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 327 400 4.4E-34
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 1 67 1.2E-29
Gene3D G3DSA:1.10.150.20 - - - 620 699 4.5E-11
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 5 783 51.887405
Gene3D G3DSA:6.20.10.30 - - - 401 451 6.5E-13
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 614 788 2.7E-32
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 4 326 2.88E-118
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 417 456 6.9E-10
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 68 325 1.2E-99
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 657 676 440.0
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 7 328 5.5E-125
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 2 67 2.6E-30
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 17 766 1.8E-47
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 328 410 1.05E-27
Gene3D G3DSA:1.10.150.20 - - - 527 607 5.8E-23
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 414 605 2.11E-50
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 628 684 7.8E-8
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 9 327 0.0
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 700 785 1.7E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.