Pseudomonas sp. ML96, IP89_RS12825
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. ML96 ML96_Contig_18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGCAAAGACAGAAACAGATTTTCAGGGGACGGCACGCAAAGTGCGCCTAGTGACGAAACGCTTATTTACGTAACAGTCGTTGCGCAAATCATGAAGTC GGATCACAATTCTCCGGGAAACGAGACGTTTCAGGAGCTCACCTCATGAATAACCCCATGAAATCGCGCTCCCAAACACAGAGACACACTTCCCAGAGCA CGCTCTGTCGCTCGCGCCGTATTCGCCATGGCCGTTCAACTCCACTCCTCCAACGCTCTGCAGCGCGCAGCAGGAAAAGCTGTCCGGCGCACGTTGGTTG CCTGTTGCCTTGACCGAACCCCCAAGGCAGCCCGGATGCAACGCTTTGCTAGCCATGCGAGAGAGCCCTGTCGATACGCAGGCTCGCGAGTGGCTGCCTG CTCTCTCACTGATCAAACAATCCATTTCGACGACACATCTCCCTGCCCAGAAGTGCATGTGCCGCTCTGCATTACTCGTCCTTGAACGAGGAGACACGAC
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| DNA Sequence for Gene |
>IP89_RS12825
ATGAACCCACTCAAGACCACCCTGCTCTGCAGCTGCACCTGCAGCATCATTCTGGCCCTAGCGGGTTGCCAGAAGGAGGCGCAATCAGCAGAGTCTCCTC GGCCGGTTCGCACGCAGATCGCGCAGCCTGCTGCCATCGACGAGCAGGTCGCACAGACAGGCGAGATCCAGGCGAATCTCGAGACCAATCTGGGCTTCCG CATTGACGGTAGAGTCGCGACTCGCACCGCCGAGGTTGGCATGAGTGTCGTGAAGGGACAGGTTCTGGCGACACTCGACCCGAACGATGTGCAGAACGAA GTGCTGAGCGCCGAGGCCGAAGTAAAGAGCGCTGAGGCCACAGAGGGTTTGGCGAAGTCGGAGCTTGAGCGGCAGCGGACCCTCTTTGAAAAACAGTTTG TTGCTCGCGCCCGTGTGGAAGAGGCCGAGGCCAACTGGCGGGCCGCGAATGCAAAACTCAAGGTTGCCAAGACGGCGCTTCAGGCTGCACTCAATAAGCT GACCTACACCGAACTCCGCGCCCCTGACGATGCCATTGTCAGCGCGGTATCGGTCAATGCTGGGCAAGTCGTCGAGGCAGGCCAACCCGCGATCAAACTT TCCTCGACCTACGAACGCGACGCCATCTTCAACGTGTCCGAGAGGATCTACACCAGCGTTCCCTCCGACGTGCAAGTCGAAGTGGCGCTTGTGTCAGACC CCTCGATCAAGGTGACCGGACCAATCCGTGACGCAAGTCCGACGGCGGATCCGGCAACCCGCACCTACCGTGTCCGCATCGCCCTACCCGGCGCCCCGGC CACCATGGCGCTGGGGGCAACAGTAACGGGACGCATCATCCTGCCAGGCAAAGCACTCGTCACTCTCCCAGCCTCGGCCTTGACCAGCGAGAACGGCAAG CCTGCGGTTTTCGTGGTCCAACCAGCAACGAAAGAGCTCGTTCGTAAGCCGGTTACTGTCGCACGCTACACGGCGACACAGGCGCTGATCGAATCTGGTA TCGCCGCCGGCGATGCTGTCGTAACGGCAGGAGTTAGCAAGCTCAGGCCCGGACAGAAGGTCGCTTACGATTCGGGAGAGCTGGCCAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGAGCGGGAAAACAAAGGCAGCTTCAATCTCTCGGCATGGTCCATCGCGCAAAAGCCGCTGATCTTTTTTCTCATGCTGATCACTCTGATCGGCGGAGC AATGAGCTACTCGAAGCTGAGCCGCAATGAAGATCCAGCCTTCACCATCAAGACCATGGTGGTCGCTGCCCGCTGGCCTGGCGCAAATATCGAAGACACC ACCAGACTCCTGACCGACCGCCTGGAGAAGAAACTCGAAGAGATTCACTATCTCGACAGACTCGACAGCTACACGCGCCCCGGCGAGACGGTGATCATGG TCAATCTGCGCGACGATGCGCCGGCGCGCGTAGTCCCAGACGCCTGGTACCAGGTGCGCAAAAAGATGGCCGACATCAGCACGACACTCCCAAGCGGAGT ACAGGGCCCCTTCTTTGACGACGAGTTTGGCGATACCTATGGCCAGATCTACGGATTCACGACCGAGGGCTTTTCGGATCGAGAACTGCGCGACTATCTG
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| Amino Acid Sequence |
>secretion protein HlyD
MNPLKTTLLCSCTCSIILALAGCQKEAQSAESPRPVRTQIAQPAAIDEQVAQTGEIQANLETNLGFRIDGRVATRTAEVGMSVVKGQVLATLDPNDVQNE VLSAEAEVKSAEATEGLAKSELERQRTLFEKQFVARARVEEAEANWRAANAKLKVAKTALQAALNKLTYTELRAPDDAIVSAVSVNAGQVVEAGQPAIKL SSTYERDAIFNVSERIYTSVPSDVQVEVALVSDPSIKVTGPIRDASPTADPATRTYRVRIALPGAPATMALGATVTGRIILPGKALVTLPASALTSENGK PAVFVVQPATKELVRKPVTVARYTATQALIESGIAAGDAVVTAGVSKLRPGQKVAYDSGELAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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