Pseudomonas sp. ML96, IP89_RS10105

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. ML96 ML96_Contig_12, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CATCTGCTGCAGCATGGCGCGGGCGATGCCCTGGCGGCGGTGGCTGGCCTGCACGGCGGTGTAGAGCAGGGTGCAGGCCTCGGGATCGTCCTTGCTCGGC AGGTACAGGGCGAAGCCCAGCACCTGGGACGGGTCTTCATCGTCCAGCGCCAGGATCAGCCGCGCGCTGCTGTCCGGCTCGCTGCCCATGGCCTGCAGGT ACAGGTGCACCTCGAAGCCGATCACATACTGGTACAGCTGGTACAGCGGGTTGCTTGGGGTGAGCGGCGCCGGGCTGAGGTCGCTGAAGTAGTCCACCAC CATCTGCAGCACCTGGCTTTTCAGGGACTCAGGCGGCGGGGTGTTGAGGTGGCTGAGGGTGAACATCGGCAGGCGGCTTTGCGGCGGGTTGGCCCGGCAT TGTAGCGCCCTTGGCGCGGCAGGCCGTCGCCGGGGCAAGACTTCCCACGCAAAAGCCGGATAATGGCGGCCATTTCGTCTTGCCTGCGTCTGGTAACCCC
DNA Sequence for Gene
>IP89_RS10105
ATGGAAATCAAGGTCAACTTTCTCGACAACCTCCGTCTCGAAGCCAAGTTCGATGACTTCACGGTGATCGCCGACCAGCCCATTCGCTACAAGGGCGATG GCTCGGCGCCGGGGCCGTTCGACTACTTCCTGGCGTCCTCGGCGTTGTGCGCGGCCTACTTCGTCAAGCTGTACTGCCAGACGCGCAACATCCCCACGGA AAATATCCGCCTGTCGCAGAACAACATCGTCGACCCGGAAGACCGCTACAAGCAGATCTTCAAGATCCAGGTCGAGCTGCCGGCGGACATCTCCGAGAAG GACCGCGTCGGCATCCTGCGTTCCATCGACCGCTGCACCGTAAAGAAAGTGGTGCAGACCGGCCCCGATTTCATCATCGAAGAGGTGGAAAACCTCGACG CCGACGCCCAGGCCCTGCTGATCCCGGCGCTGACCGAGGGCGAGGGTACGCGCATCCTCGGCAAGGACCTGCCGCTGGAGCAGACCATCGCCAACATGTC GGCCATCCTCGCCGGCCTGGGCATGAAGATCGAGATCGCCTCCTGGCGCAACATCGTGCCCAACGTCTGGTCGCTGCATATCCGTGACGCCCAGTCGCCG CTGTGCTTCACCAACGGCAAGGGCGCGACCAAGGAGAGCGCGCTGGCCTCGGCCCTGGGCGAGTTCATCGAGCGGCTGAACTGCAACTTCTTCTACAACG ACCAGTTCTGGGGCGAGGAAATCGCCAATGCCGATTTCGTCCATTACCCCAACGAGCAGTGGTTCAAGCCCGGCCCGAAGGACGCACTGCCGGAAGAGAT CCTCGACGAGTACTGCCTGGAGATCTACAACCCGGACGGCGAGCTGCGCGGCTCGCACCTGTACGACACCAACTCCGGCAACAAGGCGCGCGGCATCTGC TCACTACCCTTTGTGCGCCAGTCGGACGGCGAGGTGGTGTACTTCCCGTCCAACCTGATCGAGAACCTGTATCTCTCCAACGGCATGAGCGCCGGCAACA CCCTGGCCGAAGCGCAGGTGCAGTGCCTGTCGGAAATCTTCGAGCGTGCGGTCAAGCGCGAAATCCTCGAAGAGGAACTGGCCCTGCCGGACGTGCCGCA GGAGGTGCTGGCCAAGTACCCCGGCATCGTTGCTGGCATCAAGGGCCTGGAGGAGCAGGGCTTCCCGGTGCTGGTCAAGGACGCCTCGCTGGGCGGCGAA TTCCCGGTGATGTGCGTGACCCTGATGAACCCGCGCACCGGCGGCGTGTTCGCCTCGTTCGGCGCGCACCCGAGCTTCGAGGTGGCGCTGGAACGCAGCC TCACCGAGCTGCTCCAGGGCCGCAGCTTCGAGGGCCTCAACGACCTGCCGCAGCCGACCTTCGAGAGCCAGGCGCTGACCGAGCCGAACAACTTCGTCGA GCACTTCATCGACTCCAGCGGCGTGGTGTCCTGGCGCTTCTTCAGCGCCAAGGCCGACTACGAGTTTGTAGAGTGGGACTTCTCCGGTGAGGGCGAAGAC TCGAATGCCCAGGAAGCCGCGACCCTGTTCGGCATCCTCGAGGACCTGGGCAAGGAGGTGTACATGGCCGTGTACGACGACCTCGGTGCCAACGCCTGCC GCATCCTGGTGCCGGGCTACTCGGAAATCTACCCGGTGGAAGACCTGATCTGGGACAACACCAACAAGGCGCTGATCTTCCGCTCCGACATCCTCAACCT GCACAGCCTGAGCGACCTGCGCCTCAAGAGCCTGCTCAAGAGCCTGGAGAACTGCGAAGTCGACGATTACACCGACATCACCACGCTGATCGGCATCGAG TTCGACGACAACACCGTGTGGGGCCAGCTGACCATTCTCGAACTGAAGCTGCTGATCTACGTGGCGCTGAAGAAGTTCGAGCAGGCCAAGGGGCTGGTCG AGGCCTTCCTGCAGTACAACGACAACACCGTCGAGCGCGGCCTGTTCTACCAGGCGCTCAACGTGGTGCTGGAGGTGCAGCTGGACGACGATCTGGAGAT GGCCGATTACGAGGCCAACTTCCGCCGTATGTTCGGCAACGAGCGGCTGGACGCGGCGCTGGGCTCGGTGGACGGCAGTGTGCGTTTCTACGGCCTGACC CCGACCAGCATGCAGCTGGAAGGCCTCGACAAGCATCTGCGCCTGGTCGAGAGCTACAAGAAGCTGCATGCCGCGCGGGCCAAGGCGGCGGGGCTCTCCA GCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAGGGCGGGTGGCGTCAGTCGCCGTGAGCGCCTCAGGCCTGGGTGAAACCGCGTAGGTCCCACCTAGGTAGCCGCGAGCGCGCGGCCTTCTAACAGTCA GCTGAGTTGCTCAGGCTTATTTGCCTGTGAGTAGCCCCTGCTTTACAGCGTCCTCCAGGCTGCTCTGAGTCAGCTGTGTCAGCACATTGTCTGCCGACTC GTTGAAGGGCAGAGCGAAGATCAGCAGCAGCTGCATCCAGGTAGTCATGGTTTCGTGTTTCTCGACACGGCCCAGAACAGTGCCCTGGCCATCCTTGAAT ACAGTCTCCATGGTCAGCGTATTGCTGTATTTGCCTGGAATGATGAACAGGGTGAAGCCGGTGATGAAGGCACTGGCCATGCTGCCACGCTCGTGGTTGG TAACTTGCACGGACGCGTAGATATCGGAGGTTTGCTGGGCGAGGGTGGCGCGCTCGAACTGTTCGCTGCCTTGGTATTCCTTGAGTACCAGCTCCGCCAG
Amino Acid Sequence
>protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO
MEIKVNFLDNLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCQTRNIPTENIRLSQNNIVDPEDRYKQIFKIQVELPADISEK DRVGILRSIDRCTVKKVVQTGPDFIIEEVENLDADAQALLIPALTEGEGTRILGKDLPLEQTIANMSAILAGLGMKIEIASWRNIVPNVWSLHIRDAQSP LCFTNGKGATKESALASALGEFIERLNCNFFYNDQFWGEEIANADFVHYPNEQWFKPGPKDALPEEILDEYCLEIYNPDGELRGSHLYDTNSGNKARGIC SLPFVRQSDGEVVYFPSNLIENLYLSNGMSAGNTLAEAQVQCLSEIFERAVKREILEEELALPDVPQEVLAKYPGIVAGIKGLEEQGFPVLVKDASLGGE FPVMCVTLMNPRTGGVFASFGAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESQALTEPNNFVEHFIDSSGVVSWRFFSAKADYEFVEWDFSGEGED SNAQEAATLFGILEDLGKEVYMAVYDDLGANACRILVPGYSEIYPVEDLIWDNTNKALIFRSDILNLHSLSDLRLKSLLKSLENCEVDDYTDITTLIGIE FDDNTVWGQLTILELKLLIYVALKKFEQAKGLVEAFLQYNDNTVERGLFYQALNVVLEVQLDDDLEMADYEANFRRMFGNERLDAALGSVDGSVRFYGLT PTSMQLEGLDKHLRLVESYKKLHAARAKAAGLSS
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site