Pseudomonas sp. ML96, IP89_RS08560

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. ML96 ML96_Contig_10, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGTGAGCGAGGGCCGGGTGCTGGCCACCAGCGAGGGCCGCGAGCCACAGCCGGTGGTGGCTGGCCAGCAGGTGCAGTGGCGCGCTGGTGAACTGCAAGCC GTGCAGGCACTGGACGCTCGCCAGCGCCTGGCCTGGCAGCGCGGCAAGCTGGTGTTCCGCGACCGGCCGCTGGAGCAGGTGTTCGCCGAGCTCGAACGCA GCCAGGGGGCGCGGGTGCTGTTCGTCGACGATGCGGTGCGTGCGCTGCAGGTGACCGGCGTGTTCGCCCTCGACGATCCGCAAGCGGTGTTGAACGCCGT GGAGACCGCCTTGCCGGTGCGCCTGGTGCGCTTGCCGGGGCTGATCCTGGTCGCTTCGCGCAGCTAGAACCTGCGGCGCGCCTGGGTTTCAGAGAGAGCA GAAAATATTTTCGCGACGTCGGTTCAGAAATCGACGGCGCTTTCGTCTTCTGTCCCTGCAAATGCGACTTCTTCGCATGAAATAGCCAAGGACACCCAGC
DNA Sequence for Gene
>IP89_RS08560
ATGCGGTCGATCTCTTACTTCCCGGCACTCGCCGCCCTTCCCCTGGCACTCGCCGCCGCTCACGCGCAGGCAGTCGAACTCGACGTGCCGGCTCAGCGTC TCGACGCGGCACTGACCGACTTCGCCGAGCAGGCCAACGTGCGCCTGCTGTATGACGCTGGCCTGACCCGCAGCAGTGGCGAGGCGCCGGCGCTGAAGGG CGACTACTCGGTGAGCGAGGGCTTGCAGCGCCTACTGCAGGGTAGCGGCCTGACCTTCCAGGTCGGCGCCGACGGCACCGTTACCCTGGTGCCGCTGCCG GCCGAGCAGGGCGCCGTCGAGCTGGGTTCCAGCACCATCAGCGGCGTCGCCGACGGTCGTACCGACCTGCCGGCCGAATACGCCGGGGGCCAGGTGGCCC GTGGCGCGCGCATGGGCATGTTGGGCAACCAGGACATGCAGGATGTGCCGTTCAGTTTCAGCAGCTACACCAGTGAGCTTATCGAGAACCGCCAGGCGCA GAGCCTGGGCGATGTGCTCAACAGCGATCCGGCGGTGCGCCAGTCCTACGGCTTCGGCAACTTTGCCCAGGTCTTCGTGGTACGTGGCTTCCAGCTGTAC ACCGATGACATCGCCTTCAACGGCCTGTACGGCATCTTGCCGCGGCAGATCATCTCCACCGAGGCGGTCGAGCGGGTCGAGGTGTTCAAGGGCGCCAATG CCTTTCTCAACGGTTTTGCGCCAGGCGGTAGTGGTATTGGCGGTGCGATCAACGTGGTGTCCAAGCATGCCGAGGACACCCCCACCCGCAGCGTGACCCT GGATTACGCCAGCGATACCCGCGTGGGGGGCCATGTCGACCTGGGACAGCGCTTTGGCGAGGACAACCGTTTCGGCGTGCGTGCCAACCTGGCGCAGCGC GAGGGCGAGACCGGCGTCGACGATGAAAGCAGTCGCTTCGCCCTGGCCGCCTTCGGCCTGGACTATCGCGGCGAGCGCCTGCGCCTGTCCACCGACTTCG GCTACCAGAAGCAGCGTGTCAACGAGGGCCGCTCGCCGGTCTACCTGACCACGGGCCCGGCGCTGGGCGGCAAGATTCCGGATGCGCCGGATTCGAAGAC CAACTACGCGCAGCCCTGGAGCTGGTCGCAGCTCGAAGACACCTACGCGATGTTCAACGCCGAGTACGACCTGAGCGACAACTGGACCGCCTACCTGGCC GCCGGCGGCAAGTACACGCGTGAAAACGGCGTCTACGGCTCTTCCTATATCTACAACTCGAGCGGTGCCACCCGTATCGGTCGCCTGTATTCGCCGCTCG ATCAGGAAACCCTCAGCACCGCCGCCGGCCTGCGCGGCAACCTGGTCACCGGCCCGGTCAGCCACCAGCTCAATCTGGCGTACAACGGACTGTGGCAGGA GAAGCGCAACGCCTACGAGTCGACCCTGGCGGGCAACCGTCGCTTCGGCAATCTCTATGATCCGGTAGTGGTGGCGCCGCCGCCTGCGAATACCCGCGCC GGCGATATCCATGATCCCGACACCACCGCCAAGGTGGCGACCCGCAGCTTTGCGGTCTCTGACACGCTGGGCTTCTTCGATGACCGCGTGCTGCTGACCC TGGGCGCGCGCCATCAGATCGTAGGCTCGGATGCCTGGAGTGCCCTCAACGGCGCGCGCACCGCCAACTATCAGGAGAGCATCACCACGCCGGCTTATGG CCTGGTGATCAAACCGACCGAGTACCTGTCGCTGTACGCCAACCGCATCGAGTCGCTGCAGCAGGGGCAGACGGCGCCGAACACCGCGAACAACCCCGGC GAGATGTTCGCTCCCTACCGGGCCAAGCAGACCGAAGCCGGCATCAAGCTGGATTGGGGCACCTACGGCGGTGGCCTGGGCATCTACGAGATCGAGTTGC CGCAGGGCGTGCTCGGCAGTGACAACTTCTATCGCGTCGACGCGCAGCAGCGTAACCGTGGCGTGGAGCTGAACCTGTTCGGCGAGCCGCTGGCCGGCCT GCGCGTGATCGCCGGCGGCACCTGGATCGACTCCGAGCTCAGCGGCGGGGCCAGCGCCACCGAGGGCAAGCGCGCGGTGGGCGTGCCGGAGTTCCAGTTC AACCTGAGTGCCGACTGGGATGTGCCGGGCGTGCAGGGCCTGGCGCTCAACGGCATGCTGCTGCGCACCGGCGGGCAGTATTACGACACCACCAACATCT ACAGCATTCCGGCCTGGACCCGTGTCGACCTGGGCGCACGCTACGCCTTCGCGGTCGAGCAGCATGAGGTGACCCTGCGCGCCGGCGTGGAGAACGTCGC CGGCAAGGACTACTGGGCCTCGACCAACGGCGGCTATCTGACCCAGGGCGCGCCGCGCACCTTCAAGGTATCGGCGACCGTCGATTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCTCTGCGCCGCATGAAAAAGGGCGCCTATGGGCGCCCTTTTGCTTTTCTCAGACCGGCCTATTTGGTGGCCTTGAGCACCACGAACTTGGGCGTGGCC GCGACCTGTTCCACGCCGCGGAACAGGCGCTTGAGTTTGGCGTGGTAGCCCAGGTGGCGGTTGCCGACGATCCACAGCTCGCCGCCGGTGACCAGCGCCG TGCGGGCCTGCTGGAACATGCGCCAGGCGAGGAAGTCGCCGACCACCTGTTGCTGGTGGAAGGGCGGGTTGCACAGCACCAGGTCGAGCGAGTCGGCGGG CTGGTCGGCCAGGCCATCGGCGGCGCGGAAGGTCGCCGCGCGCTCACCGAGCGCCGCACGCCAGTTCTCAGCGGCCGACTGCACGGCCATGTAGGACTCG TCCACCAGGGTCAGCTCGGCCGCCGGGTTGGCCAGGGCGTAGGCGATGGCCAGCACGCCGTTGCCACAGCCGAGATCGGCCACGCGCTGCGCTTGCAGGC
Amino Acid Sequence
>TonB-dependent receptor
MRSISYFPALAALPLALAAAHAQAVELDVPAQRLDAALTDFAEQANVRLLYDAGLTRSSGEAPALKGDYSVSEGLQRLLQGSGLTFQVGADGTVTLVPLP AEQGAVELGSSTISGVADGRTDLPAEYAGGQVARGARMGMLGNQDMQDVPFSFSSYTSELIENRQAQSLGDVLNSDPAVRQSYGFGNFAQVFVVRGFQLY TDDIAFNGLYGILPRQIISTEAVERVEVFKGANAFLNGFAPGGSGIGGAINVVSKHAEDTPTRSVTLDYASDTRVGGHVDLGQRFGEDNRFGVRANLAQR EGETGVDDESSRFALAAFGLDYRGERLRLSTDFGYQKQRVNEGRSPVYLTTGPALGGKIPDAPDSKTNYAQPWSWSQLEDTYAMFNAEYDLSDNWTAYLA AGGKYTRENGVYGSSYIYNSSGATRIGRLYSPLDQETLSTAAGLRGNLVTGPVSHQLNLAYNGLWQEKRNAYESTLAGNRRFGNLYDPVVVAPPPANTRA GDIHDPDTTAKVATRSFAVSDTLGFFDDRVLLTLGARHQIVGSDAWSALNGARTANYQESITTPAYGLVIKPTEYLSLYANRIESLQQGQTAPNTANNPG EMFAPYRAKQTEAGIKLDWGTYGGGLGIYEIELPQGVLGSDNFYRVDAQQRNRGVELNLFGEPLAGLRVIAGGTWIDSELSGGASATEGKRAVGVPEFQF NLSADWDVPGVQGLALNGMLLRTGGQYYDTTNIYSIPAWTRVDLGARYAFAVEQHEVTLRAGVENVAGKDYWASTNGGYLTQGAPRTFKVSATVDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site