Pseudomonas sp. ML96, IP89_RS00715
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. ML96 ML96_Contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTTGAAGAACAGCTGCGACAGCTGTGGGTTCTGCGCGGCCTGGGCCACCATCAGGCGATGCATGGCCAGCGATTCCTCGCTGTTGACCAGCGCATTGAA GCCGCGGCCGATGGCCAGCAGGGCCTGCTCTATGCTGCTGTTCGGGCCCAGTTCGAAGAACAGCGGCGGTAGCTGCTCCTCGCACTTGGACTCCACCGCG CAGGCGAACAGGGTCTCCTTGTCGGTGAAATGGCTGTACACCGTGAGCTTGGATACCCCGGCTTCGGCGGCAATGGCGTCCATGCTGCTGCCTTCGTAAC CGTTCTGCATGAACAGCTGCTTGGCGGCTTCGAGGATGGCCAGACGTTTGGCCGGGTCCTTCGGCCGTCCGGGGCCACCGCTGGGCTGTAAAGATTTGTC GGACATTTGGGCTTTTTAATACTGGACTGGTGAGTTCGCTATTTTTACTATACCGGCCAGTATAAGTATTCCAAGCTCCTTTTGCGCAAGGTCGTCCATC
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| DNA Sequence for Gene |
>IP89_RS00715
ATGCTCCGCCATGCTCTGTCCCTCGCTGTGCCGCTGTCGCTGATCTCCCTGCTGGTTGCCTGTGGCAACGGTGAAACCGTCGAGGCGCCACCGCGCCCGG CGATGGTGGTGCATCCGCTGCCGGCGGCGGATGCGGTGGATACTTATCCTGGCGAGGTGCGTGCGCGCTTCGAGCCGGAGCTGGCCTTCCGCATCGGCGG CAAGATCGCCAAGCGCCTGGTGGACTCCGGCGACCGTGTGCGCAAGGACCAGCCGCTGGCCGAGCTCGACCCGCAGGACGTGCGCCTGCAGCTGGAGGCC GCCCGTGCCCAGGTCAACGCCGCCGAGGCCAACCTCAAGCTGGTGCGCACCGAGCGTGATCGCTACAAGACCCTGCTGGCCCGCCAGCTGATCAGCCAGT CGCAGTACGACACGGTGGAGAACCAGTACCGCGCCGGTGAGGCGCGGGTGAAGCAGATCAAGGCCGAGTTTGACGTGGCCAACAACCAGGCCGGCTACGC GGTGCTGCGCGCCTCGCAGGATGGCGTGGTGGCGCGGCGTCTGGCCGAGGTAGGCCAGGTGGTCGCCGCCGGCCAGACCGTGTTCACCCTGGCCGTCGAC GGTGAGCGCGAGGTGCTGATCAGCGTGCCTGAGCAGTCGCTGGAGCGCCTGCGCATTGGCCAGGAAGTCAGCATCGAACTGTGGTCGCAGCCGGATAAGC ACTTTGCCGGGCGTATCCGCGAACTGTCGCCGGCCGCCGACGCACAGTCGCGCACCTTCGCCGCCCGCGTCGCCTTCAGCGATGCCAAGGTCAAGGCCGA TGTGGGCCAGAGCGCCCGCGTGGCGATCAAGGCCGACGGCGAAGTACCACTGTCGGTGCCCATGTCGGCGCTCAGTGCGGAGAAGGGCAAGCCCTTCGTC TGGGTCATCGAGCCCCATGAGTCCAAGGCCGTTCGCACTCCGGTGCGGGTCGGCGCCTACGGCCAGGAGCGCGTGTCGATCCTGGAAGGTTTGAAGGAGG GCGACTGGGTTGTCGCCGCCGGTGTGCACGTGCTGCTCGATGGGCAGAAGGTGCGCCCGGTGGACCGCGACAACCGCCTGGTCGTGTTGGCGAACAAGGA GTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCATGTCCTTCAACCTGTCCGAATGGGCGCTGCGCAACCGCAGCATCGTCCGTTACCTGATGCTGGTGCTGGCGGTGATCGGCGCGCTGTCGTACACCA AACTGGGCCAGAGCGAAGACCCGCCCTTCACCTTCAAGGCCATGGTGGTACGTGTCGACTGGCCGGGCGCCACCGCCGAGGAAGTCTCGCGGCAGATTAC CGAGCGCATCGAGAAGAAGGTGATGGAGACTGGTGACTACCAGTTCATCAACTCCTATTCGCGCCCGGGCGAGTCGGTGGTCACCTTCATGGCCCGCGAC GACATCGTCTCGAAGAATATTCCCGAGCTCTGGTACCAGGTGCGCAAGAAGGTCGGCGACATCAAGCACACCTTACCGCCGGGCATCCGCGGACCGTTCT TCAACGACGAGTTCGGCACCACATTCGGCAATATCTACGCACTCACCGGCGAAGGTTTCGACTACGCGGTGATGAAGGACTACGCCGACCGCCTGCAGCT
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| Amino Acid Sequence |
>RND transporter
MLRHALSLAVPLSLISLLVACGNGETVEAPPRPAMVVHPLPAADAVDTYPGEVRARFEPELAFRIGGKIAKRLVDSGDRVRKDQPLAELDPQDVRLQLEA ARAQVNAAEANLKLVRTERDRYKTLLARQLISQSQYDTVENQYRAGEARVKQIKAEFDVANNQAGYAVLRASQDGVVARRLAEVGQVVAAGQTVFTLAVD GEREVLISVPEQSLERLRIGQEVSIELWSQPDKHFAGRIRELSPAADAQSRTFAARVAFSDAKVKADVGQSARVAIKADGEVPLSVPMSALSAEKGKPFV WVIEPHESKAVRTPVRVGAYGQERVSILEGLKEGDWVVAAGVHVLLDGQKVRPVDRDNRLVVLANKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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