Pseudomonas sp. KG01, ACR52_RS28405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. KG01 sole5_rep_c161, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAACATCACCCTGGCCCCCAGCAAGATCCGCAACCTCAAAGGCGCAGCGGCCAAGCAAAAGGCCATGGAATTGCTCGACCGTGTCGGCCTGGCCCACAAG GCCGGGGCTTACCCGGCGCAGCTCTCCGGTGGGCAGCAGCAGCGCGTGGCGATTGCGCGGGCGCTGGCCATGGAGCCACCGGTGATGTTGTTCGATGAGC CCACCAGCGCCCTCGACCCGGAAATGGTCGGCGAAGTACTGAGCGTGATGAAAGGCTTGGCCAAGGACGGCATGACCATGATGTGCGTGACCCACGAGAT GAACTTCGCCCGTGAAGTCGCTGACACCATCTGGTTTATGGACGCCGGGCAGATTCTGGAAAAGAGCAAGCCCGAGGCCTTTTTCCTGCAGCCCTCGCAC CCGCGAGCGCAGCGTTTTATCGCCGACCTGCGGGCCCACTGAGCCGCGGCGGTGTTGCTCCCTCTGCCATTTTGATTGACCACTTTTCAGGAGTTTTTCC
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| DNA Sequence for Gene |
>ACR52_RS28405
ATGGGTATGAAGTATTTTTTTATCGCGTTGGCCTTGGCCCCTTTGGCCGTTGCGGTGGCGCAGGCCGACCAGTTGAGCGACATCATGACCAAAAAGTCGT TGAGCTGCGGCGTGTACGCCGACGTGCCGCCGTTCTCCGCCCCCGACCCGAAGACCCGCGAGCTGGTGGGCATGGATGTCGATTTGTGCAAGGCCCTGGC CAAGACCCTCGGCGTGGCCCTGGAACTCAAGCCGCTGTCTGTTGAAGCGCGCATCCCTGAAGTGAAGATGGGCCGCGTCGACATCATCTTTGCCAACCTG GCCTACACCAAGACGCGCGCCGAGCAGATCCAGTTCAGCGACCCGTACTACATCGCCAAGGAAACCCTGGTGGTGCGCGCGGCCAATGCCGACCAGCCGA AAAGCTTCTTCAAGGACAAGCGCATCAGCTCCACCAAGGGTTCGACCTCTGAACAGTCGATCCGCATCGCCGGTGCCATCCCCGTGACCTTCCAGGACAC CGGCTCGGCATACATGGCCCTGCAACAGAACAAGGTGGTGGGGCTGGTGACCAACACCATGACCGCGCTCAAGCTGGTCAACCAGGCCAAGGCCAGCGGT GTCGAGTTGGCACTGGCCAAGGAGCCGATGGCCCTCGAACCGATTGGCGCGGGCATGCGCCGCGACGAACCGGCCTTTTTGGCCAAGGTTAACGAATCGT TGATTGCGATGGACAAGGCCGGGGAGATCGACGCGATCTGGGACCGCTGGATTGGCCCGAACACCGAGTACAAGATGGTGCGTGAAGACAAGGTGCAAAG CCTGAGCGCGCTGAAATTCGATCCGCTGCCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTAAAACCCAAAAAGCCACTCGGTTGAGTGGCTTTTTTTTGCCTGTGGCGCGTCAGTCTGGTTTTTCCTGATCCGCAGCGCGTACCTTTTCCACCTCT TCATTGATCAGCACCATGCTCTGCGGCGAAGACAGCGCAATGCCCAGTTCACGCAGCCGGCCGAGGACGGTGAACAGCAAGTCGCTGCGGGCTCCGCCTA CAGAACGCGGGCTGTTGACGTAACCGCTGACGCTGATGATCACCCCTGTGGTGGTCAGGTCCTTGAACGTCACCGAAGGCTCCGGCGCATCCAATATGGC TTCGTGTTCGGTAAACGCCTGCAGCAACAGCTCGCGGATTTGCAGCACGTCGGTTTCCAGCGGCAGGGTGAGCGTAATGCCGACCACGCCCAGCGCATTG CCCATGGTCACGTTGCGTACGTTCTGGGTGATGAACTGCGAATTAGGCACGATCACCGTCGAGCGATCGGACATCTGGATCTCGGTGGCGCGCACATTGA
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| Amino Acid Sequence |
>ABC transporter
MGMKYFFIALALAPLAVAVAQADQLSDIMTKKSLSCGVYADVPPFSAPDPKTRELVGMDVDLCKALAKTLGVALELKPLSVEARIPEVKMGRVDIIFANL AYTKTRAEQIQFSDPYYIAKETLVVRAANADQPKSFFKDKRISSTKGSTSEQSIRIAGAIPVTFQDTGSAYMALQQNKVVGLVTNTMTALKLVNQAKASG VELALAKEPMALEPIGAGMRRDEPAFLAKVNESLIAMDKAGEIDAIWDRWIGPNTEYKMVREDKVQSLSALKFDPLP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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