Pseudomonas sp. KG01, ACR52_RS10785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. KG01 sole5_c9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGATGCACGGCGGTAATGTGTTCGTGCGCAGTGAGCACGGCGGCAATACCTTCGGCATCACCCTGCCGGTCTAATTGATCGTTCCCACGCTCCGCGTGGG AATGCCGCCCCGGACGCTCCGCGTCCAGGTACTGTCGCAAGGCTGGAGTCTTGCGCAATGGTGACGCAGAGCGTCACGGGATGCATTCCCACGCAGAGCG TGGGAACGATCAGCGCAGGGTGCGGAAACGATCGGGCGACTGTTGCGATTTGGGCAACAGTCATTATCTTGTTACACTCTGTACCGTACCGCTCGCCTGC GTTAATTTGACGCATCGATGAGCGCGACGGCAAAGACAGCTGACCCGCTTACCCGAATTCCCCTCGACTTATTTCCAGGGCTCTACACTGGGAATCTGTC TTAAAGCCGCTGACTTCAGCGGCTTTTTTTTGCCGTAAAAAAAGGACAGGCACACCCCCACGACATTGGCCGTTTTCGATAGACCAAAGGAGCTCCACCG
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| DNA Sequence for Gene |
>ACR52_RS10785
GTGAAGAACTCGCTGACGTTCACCCCGCTATTCCTCGCGATTGCAGCAACGATCGCCCCTATTGCCCACGCGGCAGACTCCACCCCCGCCGACGGCTTCG TCGAAGGTTCCCACCTCAACATCAACACCCGCAATTACTACATGAACCGCGACCGTCGCGACATCCACACCGATGACAGCAAGGAATGGGGCCAGGGTTT TCTCGGCACCTTCGAATCCGGTTACACCCAGGGCACAGTCGGTTTCGGCCTGGACGCCCACGCCATGCTCGGCCTAAAGCTCGACGGCGGTGGCGGGACC GACGGTTCCAGCATCCTTCCCTACGGCAATAGCGAAGGCAGCGGCAAAGCACCGGGATCGTTTTCTACTGCAGGCGGCACCTTGAAGATGCGCGCCTTCG ACACTGAGCTGAAAGCCGGCGACCTGTTCCTCAACAACCCGGTAATCGCCGGCGGCATGACACGCATGCTGCCGCAGACCTTTCGTGGCGTGAGCCTGAC CAACCACAGTTTTGAAGGCTGGATGCTCGAAGGCGGCCAGGCCAGTTTCACCAAGCTCTACAACCAGAGCGGCCACCGACGCATCGGCACCAGCTACGGC GCCTTGCCGAGCAATACCGACAGCCAGCACATGGACTGGGCCGGTGTTTCGTTCAGCGGCATCCCGGGGCTGACCAGCAACCTGTACGCCTCCGAACTCA AGGACGTGTGGCACCAGTACTACTACGACCTGGACTACACCTACGCGCTCAACTACTTGGTCAGCCTCAACCCGGGCCTGCATTACTACCACACCCAGGA CACCGGGCAGTCGTTGCTGGGGGATATCGACAACAACACCTACAGCCTGCATTTCACCGTGGGCGTGGGCAACCACAGCGTCACCGCCGCGTACCAGCGG GTCAACGGCAATACGCCGTTCGACTACATCGCCCAGGGCGACAGCGTGTACCTGGATAACTCCCAGCAATACTCGGACTTCAACGGCCCCAACGAACGCT CGTGGAAGCTCAAGTACGCCTACGACTTCGCAGGCCTCGGCATGCCCGGCCTGACCTCGGCGGTGTCGTACATCAGCGGCAAGACCGACCTGACCAAGGT CGACCCGCAAAGCCGTGGCTACAGCGCCTGGTACAGCGCCGACGGCAAGAATGCCAAGCACTGGGAACGGGATATCGACCTGAAGTACGTGGTGCAAGGT GGCAAGGCCAAGGACCTGGCGGTGCGCCTGCAATGGGCGACCAACCGGGGCAGCAATGGCTACTCGGCGGTGGACCGGGACGTGGATGAATACCGGGTGA TCGTGGACTATCCGATCAACGTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCAGACCTTTTCTTTCTCGTCGACAGTTCAATTTTGAGTGCATAGAACTAAACTGCCAGCATCGCCACCGATGAAGTCAGCCTGATGAGTTCACGACG CCCTAAGAACATCCCTGCACGCCCGGAGCTTCTACTGATTCTGGGCAGTGGCCTCACTGTCGCCCTCATTGTCATCATCGTCGCGGCACTGCTGATTCGC GAACACGCCAGCACCTTGCAGGCCGCAAAGCGCTCCACGACCAATATCACGCAGCTGATCAATGCCGATGTGCTGCGTAACGTCGAGCTCTATGACCTTG CCCTGCAGGGCCTTATCGCGGCCAAGCAGCGCCAGGATTTGTCCCAGGTGTCCGCAGACATCCAGCATTTGGTGCAGTTTGACCAGTCTACGGCAGCGCC TTTCAAGGGCGAGGTCTTGCTGTTGGACGCCGAAGGCGACGTGATCGCTGACTCTTCGACGCTGCAGCCCACAGCGCGCAATTTCTCCAACCGTGACTAT
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| Amino Acid Sequence |
>porin
MKNSLTFTPLFLAIAATIAPIAHAADSTPADGFVEGSHLNINTRNYYMNRDRRDIHTDDSKEWGQGFLGTFESGYTQGTVGFGLDAHAMLGLKLDGGGGT DGSSILPYGNSEGSGKAPGSFSTAGGTLKMRAFDTELKAGDLFLNNPVIAGGMTRMLPQTFRGVSLTNHSFEGWMLEGGQASFTKLYNQSGHRRIGTSYG ALPSNTDSQHMDWAGVSFSGIPGLTSNLYASELKDVWHQYYYDLDYTYALNYLVSLNPGLHYYHTQDTGQSLLGDIDNNTYSLHFTVGVGNHSVTAAYQR VNGNTPFDYIAQGDSVYLDNSQQYSDFNGPNERSWKLKYAYDFAGLGMPGLTSAVSYISGKTDLTKVDPQSRGYSAWYSADGKNAKHWERDIDLKYVVQG GKAKDLAVRLQWATNRGSNGYSAVDRDVDEYRVIVDYPINVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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