Pseudomonas sp. KG01, ACR52_RS10170
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. KG01 sole5_c8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTCGGCTGATTGGCGCTTCCCAAAACCGCTGTAAGGGCTTTACATTGGCACTTGCAGCGGTTTTCAGGGAACTTGGAAAAATCAGCGCTTCCCTAAACG CTGGTGATTTTTTAAACTGTTCAGTCCGCTCGCCCAACCGGGCAGCGCGCATCTTGCATCCGCTCCGAGGAATATCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGACCACGTGGCAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACTGGCGGCAAAGAGCCCCTGGTCCAGTGGG AAAACGACAAGCCTACCGTTGTAGCCCTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCAACGCCGAAATCGTTGAAGACGAACCGCT GTTTGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCCAACGGCAGGAGTTAACACT
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| DNA Sequence for Gene |
>ACR52_RS10170
TTGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCCCAGACCAGGTCAACCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGACGGCCAACGCCGCCGTAGCGGCGAGGCGTATGTCACCCATCCTCTTGCGGTGGCAAATATTCTGGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTGATCGAAGACACCGGCATCGCCAAGGAAGCGCTCAGTGCGCAATTTGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAAATGAACTTCGAGACCAAGGCCGAAGCCCAGGCGGAAAACTTCCAGAAAATGGCCATGGCCATGGCCCGCGATATCCGGGTGATTC TGGTCAAGCTGGCCGACCGGCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGCGAAAAACGCCGGCGCATTGCCAAGGAAACCCTGGAAATCTACGC GCCCATCGCCAACCGGCTGGGCATGCATGCCATTCGTATCGAGTTCGAAGACCTCGGTTTCAAGGCCATGCACCCGATGCGTTCGGCGCGTATTTACCAG GCGGTCAAGCGCGCCCGCGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCCCTGAGCCATTGCCTGGCGATTGACGAGATCGAGGGCGAGGTCA GCGGCCGGCAGAAGCACATCTACGGCATCTACAAGAAGATGCGCGGCAAGCGTCGAGCCTTCAACGAGATCATGGACGTGTACGCGTTCCGGATCATCGT CGACAAGGTCGACACCTGCTACCGCGTGCTGGGCGCTGTACATAATTTGTACAAACCCCTGCCGGGCCGCTTCAAGGACTACATCGCCATTCCCAAGGCC AATGGCTATCAGTCGCTGCATACCACGCTGTTCGGTATGCACGGGGTGCCGATCGAAATCCAGATCCGCACGCGGGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCACTGGCTGTACAAATCCAGCGGCGACGAACAGCCAAAAGGCACACATGCCCGCGCCCGCCAGTGGGTCAAAGGCGTGCTGGAAATGCA GCAACGTGCCGGCAACTCCCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAGGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCGGTCGACTTTGCCTACGCGGTGCACACCGATGTCGGCAACAGCTGCATCGCCTGCCGGATCAACCGTCGCCTGGCCCCGC TGTCCGAACCGCTGCAAAGCGGCTCGACGGTGGAGATCGTCAGCGCACCGGGCGCCCGCCCGAACCCGGCGTGGCTTAACTTTGTGGTCACCGGCAAGGC GCGCACTCACATCCGTCACGCGTTGAAACTGCAGCGCCGTTCCGAGTCCATCAGCCTCGGCGAACGCCTGCTGAACAAGGTGCTCAACGGTTTCGACAGC GCCCTGGAAAAGATCCCGGAGGAGCGCGTGCAAGCGATGCTCCACGAGTACCGCCAGGAAACCATCGAAGACCTGCTGGAAGATATCGGCCTGGGTAACC GCATGGCCTACGTGGTCGCCCGCCGCCTGCTGGGCGAAGGCGAACAGTTGCCAAGCGCCGAAGGCCCGCTGGCGATTCGCGGCACCGAAGGCCTGGTGCT CAGCTACGCCAAGTGCTGCACGCCGATCCCCGGCGACCCGATTGTCGGCCACCTGTCTGCCGGCAAAGGCATGGTCGTGCACCTGGACAACTGCCGCAAC ATCAGCGAGATCCGCCACAACCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAACTGCGGGTCGAGCTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCGGCCGACGGCAATATCGAGAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTACACGACCGCGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCTTGACCGGGGTCATCCGCATCACCCGTATGCGT GCATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCTTCAAATGAGCCCATCCATTACAAGGAGTCATTCATGACCAAGACTGTTATCACCAGCGACAAGGCCCCGGCCGCGATCGGTACTTACTCCCAGGCG ATCAAGGCGGGCAACACCGTCTACATGTCCGGCCAGATCCCGCTGGACCCAAAGACCATGGAACTGGTTGAAGGCTTCGAAGCCCAGACCGTACAGGTCT TCGAAAACCTCAAGTCCGTGGCTGAAGCCGCTGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGT CAACGAGATCATGGGCAAGTACTTCGAACAGCCTTACCCTGCCCGCGCCGCCATCGGCGTTGCTGCCCTGCCAAAGGGTGCGCAGGTTGAGATGGACGCG ATTCTGGTCATCGAGTAAAACACCGGCGCAGCCTCCACGGGCTGCGCCGACTTCGTTTTAAAAGGATTTCGTGATGCGCAAAGCGCTTGTAGCCTCTTCG
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSTYLGPDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDEIEGEVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS ALEKIPEERVQAMLHEYRQETIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSAEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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