Pseudomonas sp. KG01, ACR52_RS10060

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. KG01 sole5_c8, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCCGTGCCAGCCTCAAGGGCGAGTTCCGCATGCAGCAAACCATGATTCAGCCTGCTGAAAACAATCCGTTGAAATTCGCCCCGAATGCCGACGAAGCGTT ACTGCTGCTGCTTCGCCATGGCAACCAAGCGTTTATGGCACCGGACATTGCAGTGCGCGACAGTTTCGACGACCTGCGCGCCCACCAACTGGCGGTGATG GCCGGCGTGGAAGCGGCGATCAAGCACCTGCTGATGCGTTTCGAACCGGCGCAGTTGGAAGAGCGCATGGGCAAACCCGGCGGGCTCTCGAGCATTTTCA ACGGCTCGCGCCAGGCCCAGTACTGGCAGCAGTTCACTGAGCTCTACAGCAATATTTCCCGCGAGGCCCAGGAAGATTTCCAGGACCTGTTTGGCCGCGA ATTCAGCCGGGCCTACGAAGAGCACAGCGCACGACAGCGACGCTGACAGCGACGCGACAAAGGATCAACGGATAGCTAAGTACGTCATTGAGGACGCAGG
DNA Sequence for Gene
>ACR52_RS10060
ATGATTCCCAGGTTTTTACTCGCAGTGGCCACCGCGCTGCTGCTGACGGCGTGTGCCAAGGATGCCGTCAAACCCGAAGCGGCTGGCGATGCCGAGGCAA ACACCGCCGCCGTCGAGCTGCACTTCCACGCGATTGCCGGGCTTAACCCCGGCGCCAACGGCCAGGCCGCCCCTGTGCGCGTGCGCATCTTCGAACTGAA AAACGCCGCCACCTTCGGCCGCGCCGATTACTTCGCCCTCGCTGACCGCGCGCAGTCCACCCTCGGGCTGGACCTGCTCGACCAGGACGAAGTGATGGTC CAGCCCGGCCAGCAACTGAGCGTGCAGCGCGACCTCGACCCGTCCACCCGCCAGATCGGGCTGTTGGTGGGTTACCGAGAGTTGGACCGCGCGCAATGGC GCACGGTGATCAACGTGCCGGCGCGCCAATACACCGAATACCAGATCAGCCTCGATGTGCGCGCGGTGAGTGCGGACGTCGTGGTTTCCCCATCCAGCCC TGCCCAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GAAGCAATCGGAGCTCCCATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATCGGAACGCAGCACTTCCAGCAGCATGACCGTTACCTGG AAAACCTGATCGACGCCCGCAGCCGCCCGTTGTCCGCCGGCGCCTGGGGCTTTTCCGAGTTGCTGATCGACCAGGGCCTGCTGGCCCAGGGCAAGCTGGC GATCGTGTCGGCGCGCGGCCTGTTGCCCGACGGCACGCCGTTCAATATCCCCCAGGATGACCTGGCGCCGAGCCCGCTGAACATCGACGACAACCTGCGC GACGGCCTGGTGTACCTGGCCTTGCCGCTCAAGCGCGCTGGCGCCCGCGACACCGTCGACGACGGCGAAGACCTTGGCGCCGCGCGTTATGTAAGCCAGG TACGCGAAGTGCGCGACGACAACGCGCCGTTCGAAAACCGCGCGCCGGTCGCCGTGGGTTCGCGGGCGCTGCGCCTGCTGACAGCGCAGGACGGCATCAG
Amino Acid Sequence
>type VI secretion protein
MIPRFLLAVATALLLTACAKDAVKPEAAGDAEANTAAVELHFHAIAGLNPGANGQAAPVRVRIFELKNAATFGRADYFALADRAQSTLGLDLLDQDEVMV QPGQQLSVQRDLDPSTRQIGLLVGYRELDRAQWRTVINVPARQYTEYQISLDVRAVSADVVVSPSSPAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site