Pseudomonas sp. KG01, ACR52_RS10055
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. KG01 sole5_c8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGGCCCTTGGCGGCACGCTCCAGGTGGAGAAAGTCCGCGTCATATTCCATATCTTCGCCACACGGCGAAGTCGCGGAAACGGCGGTGAGCAGCAACGGC ACATCCACTGAAATTGATCTCCCTATCAGCCCGTTAGATGGCGGGCAATGCATGCATTAGTTGCGCGAGGAACTGTGCATGTTTTCTTGGTTATATAAGC AAGATGCCACTACTGTGCCATTACTGGTATTCAAGAAGTTGTGCATTTTTGGTGTAGTAGTTACGCCTTGTCAAGGTAAGCTATTCGCGCTCTGTGACAG ATGTGCGGTGCTTAACACCCTGCGCGACTGGTGGGTCGAGTGGCACGCAGGGGAAGGATTTTTGTCATGGGGCCCGGTTAACATCAGCGATCACGCTGGT AAAAGCAGGTGTGAAGGTCGTTTTCACCATTGGGTGGGGATGTCTCGGGAAACGCTGCCCCGGGAACCGACTGCGCGCGAAGTATCAGCAAGGAGGCGAG
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| DNA Sequence for Gene |
>ACR52_RS10055
ATGTCGCTGTGTTTGACTATCACTAGTTATCACAAGATTACCCCCGGGCAATGCTCGGAAAAGTCCATGAACCAGGGCTCGATGGCGATCGGCCGCAGTT CGGAAAATGACTGGGTATTGCCTGATCCTGAGCGTCTGGTCTCCTCGCAACACTGCGTTATTCAATACAAGGATGGCCGGTATTATTTAACCGATAACAG CACCAACGGTGTGGAGTTGGTTAGCGCCGGCATTCGTTTGCGCCGGGGTAACAGCGAACCGCTGCAAGATGGCGAGTTGATCCGCATCGGCGATTACGAG ATCCAGGTGCGCATCGATTTCAATGTGCAAGCCGTTGATAGCCGGCCCTTTGCCGGTGATTCGCCGAACAGCTTTGAAGCGCTGATGGGCGCCGTTGTGA GTGCGCCGGCAGCGACACCGGTGATCGCGCCGCAGTTCCAGGGTGCCTCGTCGATGGAAACCATGCCGGACCTGTTCGACTTCCTCAGCCCCACCGCCGT GCCGCCGCCGACCGTGCCGGACCACGTGCCCTCCGAGCAACACGATTTCCGCCCGCCGACCCCGGTGGCTGTGCCCGTGGTCGAAAAACCCGTGGTAGCG AGCTCGGTGATACCCGAGGACTGGGACCTGCTGGGCGACACACCCGCACCGGCCATTGGCGCACCGCCGCCACCACCGGCGCCCGTTATCCAACCGCCAC CCGTGGTCGAGCCTTCGCTCCCCGTGGCCGACACCCAACAGCCCGATCTCTTGCAAGCCTTCCTGCGTGGCGCCGGCCTCGACCAACTGCGCCTGGACAA GGCCCAGGCCGAAGCCCAGATGGAAAGCATCGGCCGCAGCTACCGGCTGATGGTCGAAGGCCTGATCGACGTGTTGCGCGCCCGTGCCAGCCTCAAGGGC GAGTTCCGCATGCAGCAAACCATGATTCAGCCTGCTGAAAACAATCCGTTGAAATTCGCCCCGAATGCCGACGAAGCGTTACTGCTGCTGCTTCGCCATG GCAACCAAGCGTTTATGGCACCGGACATTGCAGTGCGCGACAGTTTCGACGACCTGCGCGCCCACCAACTGGCGGTGATGGCCGGCGTGGAAGCGGCGAT CAAGCACCTGCTGATGCGTTTCGAACCGGCGCAGTTGGAAGAGCGCATGGGCAAACCCGGCGGGCTCTCGAGCATTTTCAACGGCTCGCGCCAGGCCCAG TACTGGCAGCAGTTCACTGAGCTCTACAGCAATATTTCCCGCGAGGCCCAGGAAGATTTCCAGGACCTGTTTGGCCGCGAATTCAGCCGGGCCTACGAAG AGCACAGCGCACGACAGCGACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGCGACGCGACAAAGGATCAACGGATAGCTAAGTACGTCATTGAGGACGCAGGATGATTCCCAGGTTTTTACTCGCAGTGGCCACCGCGCTGCTGCTGA CGGCGTGTGCCAAGGATGCCGTCAAACCCGAAGCGGCTGGCGATGCCGAGGCAAACACCGCCGCCGTCGAGCTGCACTTCCACGCGATTGCCGGGCTTAA CCCCGGCGCCAACGGCCAGGCCGCCCCTGTGCGCGTGCGCATCTTCGAACTGAAAAACGCCGCCACCTTCGGCCGCGCCGATTACTTCGCCCTCGCTGAC CGCGCGCAGTCCACCCTCGGGCTGGACCTGCTCGACCAGGACGAAGTGATGGTCCAGCCCGGCCAGCAACTGAGCGTGCAGCGCGACCTCGACCCGTCCA CCCGCCAGATCGGGCTGTTGGTGGGTTACCGAGAGTTGGACCGCGCGCAATGGCGCACGGTGATCAACGTGCCGGCGCGCCAATACACCGAATACCAGAT
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| Amino Acid Sequence |
>type VI secretion protein
MSLCLTITSYHKITPGQCSEKSMNQGSMAIGRSSENDWVLPDPERLVSSQHCVIQYKDGRYYLTDNSTNGVELVSAGIRLRRGNSEPLQDGELIRIGDYE IQVRIDFNVQAVDSRPFAGDSPNSFEALMGAVVSAPAATPVIAPQFQGASSMETMPDLFDFLSPTAVPPPTVPDHVPSEQHDFRPPTPVAVPVVEKPVVA SSVIPEDWDLLGDTPAPAIGAPPPPPAPVIQPPPVVEPSLPVADTQQPDLLQAFLRGAGLDQLRLDKAQAEAQMESIGRSYRLMVEGLIDVLRARASLKG EFRMQQTMIQPAENNPLKFAPNADEALLLLLRHGNQAFMAPDIAVRDSFDDLRAHQLAVMAGVEAAIKHLLMRFEPAQLEERMGKPGGLSSIFNGSRQAQ YWQQFTELYSNISREAQEDFQDLFGREFSRAYEEHSARQRR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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